UFO04226.5prime Sequence
1152 bp (1047 high quality bases) assembled on 2009-02-18
> UFO04226.5prime
CAGTCGACATGTCCATCAAGTGCGTCCACCTGGTGGGCCTTCTGGTCCTG
CTAATGGGCGGGGCCAACGCCCTTTTCGATCACACACTGAAAAGGGACTT
CCCAGGTCCTTACTGCGCACGGGAGAACACCTGCTGCAAGGATCGGCACG
ACGGCTGCTCGGTGCCCATCTCCAACACTCTATGCTACTGCGATGAGTTC
TGCGATCGGGACGACTCCAGCGACTGCTGTCCCGACTACCGCTCCTTCTG
CATCGGCGAGGTGGACCCAATCATCTCCTGCGAGCACAACGGCGTCTACT
TCAGCAAGTACAATACCACGTGGGACAACTGCAACGAGTGCCGCTGCCTG
GAGGGCGGCAGCGTGCAGTGCGACGAGGATCTGTGCCTCACCGACGACGC
GATTGTGCACAGCGTGAACTCGATTCACAGACTGGGCTGGTCTGCCCGCA
AGTATGACCAGTGGTGGGGTCGCAAGTACTCCGAGGGACTAAAGCTGCGT
CTGGGCACCAAGGAGCCCACGTACCGCGTGAAGGCGATGACGCGTCTAAA
GAATCCCACCGATGGCCTGCCCAGCTCCTTCAACGCACTGGACAAGTGGT
CCAGCTACATCTCCGAGGTGCCCGACCAGGGCTGGTGCGGTGCCTCATGG
GTGCTGTCCACCACCTCGGTGGCCAGCGATCGCTTCGCCATCCAGAGCAA
GGGCAAGGAGAATGTCCAGCTGTCCGCCCAGAACATCCTCTCCTGCACAC
GCCGCCAGCAGGCTGCGAGGGTGGCCACTTGGACGCCGCCTGGCGCTACT
TGCACAAGAAGGGCGTGGTCGACGAGAACTGCTATCCGTACACACAGCAC
CGCGACACCTGCAAGATCCGCCACAACAGTCGCTCTCTGAGGGCCAATGG
ATGCCAAAAGCCGGTCAATGTGGACAGGGACTCCCTCTACACGGTGGGTC
CGGCTAACAGCTGACGGGAGCGACTTATGGCCGAGATCTTCCACTCCGGT
CCCGTACAGCCACCATGGCGGGTTAACAGGACTTCTTCGCCTACTCAGGC
GGTGTGTACCGCCAAGACAGCCGCCCACGAAAGCGCTACTGGATTCCACT
CGGTTGAAGTTGGGTGGGCTGGGGGAAGAGCACAATGGTGAAAGAATGAA
TC
UFO04226.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Swim-RA | 1989 | CG3074-RA | 150..1294 | 8..1143 | 5210 | 97.8 | Plus |
| Swim-RB | 2049 | CG3074-RB | 210..1354 | 8..1143 | 5210 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22190672..22191567 | 1062..175 | 4020 | 97.9 | Minus |
| 2R | 25286936 | 2R | 22191662..22191828 | 174..8 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:18:16 has no hits.
UFO04226.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:26 Download gff for
UFO04226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3074-RA | 145..1306 | 1..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:27 Download gff for
UFO04226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Swim-RB | 204..1365 | 1..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:41 Download gff for
UFO04226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Swim-RB | 204..1365 | 1..1152 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:41 Download gff for
UFO04226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22190590..22191567 | 175..1143 | 97 | <- | Minus |
| 2R | 22191662..22191831 | 1..174 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:27 Download gff for
UFO04226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18078095..18079072 | 175..1143 | 97 | <- | Minus |
| arm_2R | 18079167..18079336 | 1..174 | 97 | | Minus |
