UFO04227.5prime Sequence
1113 bp (1015 high quality bases) assembled on 2009-02-18
> UFO04227.5prime
CAGTCGACATGGTTAAGCTCGGCTTTCTTTCACTGTTAATTGCTGCCTGT
GTGGTTGCTGCCTTTGCTGCGGGTGATTGTCCTTCATCCACCAAGGTTCA
GAACTGTACGCCAAAATGCCTGCATGACAGCGAGTGCAGCGCCATCGGCG
GAAAATGCTGTCCGAATTTGTGCAACGGTCGCAGTTGTGCTCAACCGAAT
GTCCTGGGAAATTCTGGAGCCGATAAATCGCCCTTCGGCAGCAAGAACTC
TGGAGCTACTGGCAGTTATTGCGGCAATGTCAAGTGCGGCAGCTTTGAGA
AATGCGAAATGGATCGCAGCACCAAGCGACCCAAGTGCGTGAGATCGGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTG
TCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATT
GGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCAG
GTTTTCACCGTAACACGCCACATCTTGCGATATATGTGTAGAAACTGCCG
GAATCGTCGTGTATTCACTCAGAGCGATGAAACGTTTCAGTTGCTCATGA
AACGTGTACAGGTGACACTATCCATATCACAGCTCACGTCTTTCATGCAT
ACGAAATCGATGACATCATCAGCGGCAGATGTGAATAAGCGATAACTGTG
CTTATTTTCTTACGTCTTAAAGGCGTAATCGCTGACCGTTGTTTAAGTAA
CTTGAACTGACTG
UFO04227.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30197-RA | 481 | CG30197-RA | 51..390 | 8..347 | 1700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14514282..14514456 | 75..249 | 875 | 100 | Plus |
| 2R | 25286936 | 2R | 14514804..14514901 | 250..347 | 490 | 100 | Plus |
| 2R | 25286936 | 2R | 14514152..14514215 | 12..75 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:19:24 has no hits.
UFO04227.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:25 Download gff for
UFO04227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30197-RA | 40..390 | 1..351 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:15 Download gff for
UFO04227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30197-RA | 40..390 | 1..351 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:19 Download gff for
UFO04227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30197-RA | 44..394 | 1..351 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:19 Download gff for
UFO04227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14514804..14514911 | 250..360 | 93 | -> | Plus |
| 2R | 14514150..14514215 | 8..75 | 97 | -> | Plus |
| 2R | 14514283..14514456 | 76..249 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:15 Download gff for
UFO04227.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10401655..10401720 | 8..75 | 97 | -> | Plus |
| arm_2R | 10401788..10401961 | 76..249 | 100 | -> | Plus |
| arm_2R | 10402309..10402416 | 250..360 | 93 | -> | Plus |
