UFO04228.5prime Sequence
1151 bp (1043 high quality bases) assembled on 2009-02-18
> UFO04228.5prime
CAGTCGACATGGAGGAATTGCCGCGCGCATTAAACTACGAACTCTCGCAC
GATTTGCATTTCGATCATTACGCCGGTGCCGCAGCTCAGAAGATTCTGAA
CAGCGGGAGAAGTTCTCCTGAAGCGTCCACCCCGACCATCACCACATTGG
ATGCCATCTCCAGCAGTGATTTCCTGAAACAGATTGGCCAGCAGATCCTC
AGTTCCATCCAACTGAAACATCAGCATCAGCTCAACGAAGTCAGCCATCC
GAGGAATTCCACCAGCGAGGAGATCATGGATTTCGATCTGGCCAATCGGG
TGATTCTGGACAGCAGCAGTGTGGATCAGCTGCAGCAGCAGTTGGAGTAC
GATAAATTCATGAACGAGGTGTGGATCGGCATCGTCTTCACCCTGATCCT
CATCTCGATGGTCTTCTGCATCTGCTCCTGCTTCCTGTACCATCAGTTCC
GCACCTGGAAACGCAATTATCGCAACAATGCAAATGGCTCGACGCAGTGC
ACCATTGTAGATATAGAGGCGTTGAAACTGCATCCGGATGTGGAGGATCC
GGTTCCGGAATACACCCTAGTATCTGGATTGCCCAGCTACGAGGCGGCTC
TGGAGCTGCTACAAAAATCCCCGCAGTCATCCTGCCTGATTGTCTATCCG
AGTGTGTTCAATGTGTTCAATAAGCAGGAGAGGAGCAGCCAGGAGCTGCA
GCATCCAGGAGTTGCAACATCAGCACCTCCAGCCGCACCCGAGAATCACC
TGGCACCGCAGACACCTTCGTTTTGTGATGCCACAATGCCGCTGCTCCCA
GCAACAACAGCAGCAGCAGCAACACATGCAGCAGCAACAGTAACAGCAGT
AACAGCAGCAACAGCAACATCTGCAACATTGGCAGCTTCGCCACGTGCGA
GTCGATTAGCCAAACTTTGTGATGATGCCAATTGTGCCCAGTTATGCGGA
GTATTCGGCAGCTCGTACAAAACCGTCGACGAGAAAAAGAATCGAGTCAA
AGACGCCAGTCGAAGACGAATCAGCGGGCAGCTTTCTAGAACATCGTTTG
GCGCGCGGCCCAGTATGTCTAATCAATCTAATCTAATCTAAATCCCAACT
AGCTAGGAATCTGTATGAACTATGGCTGAATCCACATAAAGCCCGGCCAC
C
UFO04228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| comm2-RA | 1516 | CG7554-RA | 189..1208 | 8..1019 | 4885 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15697935..15698460 | 991..469 | 2480 | 99.4 | Minus |
| 3L | 28110227 | 3L | 15699202..15699662 | 468..8 | 2290 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:49:06 has no hits.
UFO04228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:24 Download gff for
UFO04228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm2-RA | 180..1217 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:17 Download gff for
UFO04228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm2-RA | 181..1218 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:35 Download gff for
UFO04228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm2-RA | 181..1218 | 1..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:35 Download gff for
UFO04228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15697935..15698460 | 469..991 | 99 | <- | Minus |
| 3L | 15699202..15699669 | 1..468 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:17 Download gff for
UFO04228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15691035..15691560 | 469..991 | 99 | <- | Minus |
| arm_3L | 15692302..15692769 | 1..468 | 98 | | Minus |
