UFO04231.5prime Sequence
1119 bp (980 high quality bases) assembled on 2009-02-18
> UFO04231.5prime
CAGTCGACATGAAGTTCTGTGCTGCCGTGGCTCTGCTACTGATCGCCGGC
ATTGTGGCCAGCGGCGATGCCCTGCCCGCCAGGAAAAGAATGGTCTACCT
CCAGCAGCCCGCAGCAGCAGAGTGGTACGGATCCGCACCCCATCAGCGCT
TCATGTATATGCAGTATGTCCAGCCCGGCCGCACCCACGCCCGTTCCACC
CAGGCAGCCAGTGCCCTCGTGGCCGGAGAGACCGTAGCCACCGGAACCTA
CCTGAAGGATTGCAATCACGCAGAGTCTGATACTAGCGCCGAGGGAGTCC
CAGCTGACGATGTCCTCGCAGCCGCCGGAGCCCACGGCGTTACCTCCGTG
GCCGAGGCTTATCCCGACCAAGCGCCAGTTGTACAGGTGGCCACCAATTC
CGACGTAGCACCCCAAGCCGAGTCAGAGGCTGAACCCGAGCCCGAGGCCG
CAGACGACGCCGCTAAGGTTCCACGAGACTTCAACTTCGCCGCCGAGGAA
GCCTCCGTCGGCTCTGCTGCTGAGGAGGAATCAGTTCCCCTGCCCGTTGC
CGAGGCCGAGCTTCCAGCCCCCGCTCCCATTGCTCCAGTGGCCGCCGTGG
TGCCAGCGAACCGCTACCTGCCCGCCAAGAAGAAGGTGATCGTCGAGCTG
GATCAGGAGGAGGAGGAGCCCCAGGCCGCCGCCATTGAAGACGAGGAGGA
AGTAGAGAACGCTGTGGCCGACGACGTTGAGGAGGACGAGGAGGAGCTGT
CCGTGCCCGTAAAACCCATTAACCCTGTGCGCGTGCCCAACGCCCGTCGT
CCCGCAGACAGAAGCCTGTGAAGGCTGCTTCTCCTGCCGGCAAGCCCTCC
AAGAAGCCCGCCGCCCTCTGCCCGCTGGCACTTTTTCCCAATCGATTTCG
GAGGCACCACGGCGGCGCCATTGCCATTGCCAACTCTTTCAGCACCGGCG
GAGGGCGATCTGCTACAGCCCCGCCATCGCATACGGCTCTCCGGAGTCCG
CGTCCGCCGAGCCGCCCCAATCCCAGCAGTCCGCCACGCAAGCTTTCTAG
ACATTCGTTGGGCGCGGCAGGTATGTCTTATCTAATCATATCTATCTAAT
CCACTAGCCTAGGAGATTC
UFO04231.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11370-RA | 1323 | CG11370-RA | 147..1188 | 5..1037 | 4895 | 98.7 | Plus |
| CG11370-RB | 1308 | CG11370-RB | 147..1173 | 5..1037 | 4660 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22712737..22713514 | 258..1028 | 3435 | 98.2 | Plus |
| 3L | 28110227 | 3L | 22712502..22712672 | 88..258 | 855 | 100 | Plus |
| 3L | 28110227 | 3L | 22712301..22712384 | 5..88 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:12 has no hits.
UFO04231.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:23 Download gff for
UFO04231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11370-RA | 140..1189 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:41 Download gff for
UFO04231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11370-RA | 142..1191 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:55 Download gff for
UFO04231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11370-RA | 142..1191 | 1..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:55 Download gff for
UFO04231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22712296..22712383 | 1..87 | 98 | -> | Plus |
| 3L | 22712502..22712672 | 88..258 | 100 | -> | Plus |
| 3L | 22712738..22713528 | 259..1041 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:41 Download gff for
UFO04231.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22705396..22705483 | 1..87 | 98 | -> | Plus |
| arm_3L | 22705602..22705772 | 88..258 | 100 | -> | Plus |
| arm_3L | 22705838..22706628 | 259..1041 | 97 | | Plus |
