UFO04236.5prime Sequence
1054 bp (1018 high quality bases) assembled on 2009-02-18
> UFO04236.5prime
CAGTCGACATGAATCTGCGGTATATCTGCACTGTGGCTCTCGTGCCAACG
CTCTGCGTGCTGCTGGTGCTTCTGCTGGAATTCGTGGAGGAGGGCCTGGC
CCAGAATTCCGATCCCCTTTTCGAGCTTCCCGTCCAGCTGGTCGGCTTCC
CCGTAATCGTGCTATCCGTCCGCCTGTCCCAGTTCGCCAAGAAGTTGGCC
TACTCCCTCAGTCCCAGTACATATAGATCTCGCACCAGAAGGGATACGGC
TCATCCTCTGGCTCTTGATGCTGAACTGGCCCAGAAACAGATACTGGGTG
AGTTCGGACCCCAAGCCTGCATCCTGGAGGAGCCGTGCCGTGTCCATGCC
TCTAGATACTCAGGCAGTTCTGATGGCCGCTTTCCTGATGGAAAAGCAAA
GCCACATGCTGCCTGGTCGGAAGTGTTGCGGAACTACAAAGTGCAATCGG
GCGTCAGTGGGATGAAGCAATGGTACCTTCTATCCCTGTTCATCGGCGAT
GCTGTGCGGGATGTGCCGCTGTGCAAGCACCTGGCCAAAAGGATGCCGTG
TCCAGGAGTCGGACCTCTGCCGGCGCCCCAACCACGAGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGATCTGATCGCAGCGGCATCAGCACTTGTCGCTTGCGTATATA
TTTGCCCATGTGAAACGGGGGCGAGAGTGTCATATGCCACGTTTAATCAA
ACTGGTGAACTCACCCAGGATGGCTGAAACGAAAAACAATTTCCTCATTA
ATCC
UFO04236.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7330-RB | 1166 | CG7330-RB | 123..702 | 8..587 | 2900 | 100 | Plus |
| CG7330-RA | 986 | CG7330-RA | 123..702 | 8..587 | 2900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18150677..18150891 | 217..431 | 1075 | 100 | Plus |
| 3L | 28110227 | 3L | 18149045..18149256 | 8..219 | 1060 | 100 | Plus |
| 3L | 28110227 | 3L | 18153186..18153343 | 430..587 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:13:18 has no hits.
UFO04236.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:28 Download gff for
UFO04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7330-RA | 117..705 | 1..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:51 Download gff for
UFO04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7330-RA | 119..707 | 1..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:52 Download gff for
UFO04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7330-RA | 119..707 | 1..592 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:52 Download gff for
UFO04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18149041..18149253 | 1..216 | 98 | -> | Plus |
| 3L | 18150677..18150890 | 217..430 | 100 | -> | Plus |
| 3L | 18153187..18153348 | 431..592 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:51 Download gff for
UFO04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18142141..18142353 | 1..216 | 98 | -> | Plus |
| arm_3L | 18143777..18143990 | 217..430 | 100 | -> | Plus |
| arm_3L | 18146287..18146448 | 431..592 | 98 | == | Plus |
