UFO04238.5prime Sequence
1145 bp (1039 high quality bases) assembled on 2009-02-18
> UFO04238.5prime
CAGTCGACATGAATAGAGCTAGCGGTGTCCTGTCGCTGCTGTTTGTGGCC
AGCGCCCTGGGCGGCGTGATCGAGGACTTTGAATACCTATCGGTGGCCGA
GATGTGCGACCTGCTGCCGCAGGAGACAAGCTTCCTGCGACCGAATACCT
GCGACAACTGGGTGCGGTGCGCCAGCAACTACAGCGTGCTGGAGCAGGGC
GGCTGTGCCGCAGGACTCAACTACAACAAGGAGCTAGGCCGCTGCATCCT
GGCATCCTCCAGCGCCGCGGTGTGTCCCTATGCCGACAGCATTGCGGACA
AGGCCACGAACCTGTGCGCCAACGAAACGGAAGGCGCCTTCATCGTGGAT
CCCAGCAGCAGCGATTGTCGCGGCTACATCTTGTGCAAGTCGCACAAGCA
GATCAAGGCCAACTGTCCCAACGAGCTGATCTTCCATCCCGTATCGAGGT
CTTGCGTGTACGAAAAGCAGTACCGTTGCCCCATCAGCCAGACGAAGAAG
ACCAGTCCCGCCTGCCGATCCCTGCCGAACAACACCCGTCTGGCCGATCC
CGTCCACTGTGACCAGTACTACGAGTGCGTCAGCGAGGTCTTGCACAGCC
GAGCCTGTCCAGTGGCCAGTGCCTACGATGCTAATCTCGGCTACTGCGTG
GATGTGGCTGAGGTGTCCTGCTACGAGAGTGCCGCCCTGCCGGAACCGGA
AAACACCTTCTGCCTGGACAGTGCCACCGGATCCGCTCGCGTTGGCTACT
TTGCCGACGACGAGTCCTGCTCCCACTACTATATCTGTGGCAGCCCCGTC
GCCGGCAAGCACGACACGGAGCCCAAGCACCTGAGCTGTCCACTTGGCCA
GTACTTCGACTTCGAGAAGCTCTCGTGCCGCGACAGACTTAACGTACGCT
GCCAGCTGGACAGGTGTGTGGGCACCAACATCACCTACGTAAACGTCGCC
GGCGATTGCCAGAGCTTTGGACGTTGCTCCGGCGGAGTGACCGTCAGCCT
GGGCCAGTGCCCAACGGGCTACTACTTCGACGAGCGCAACAGGATGCACC
ACAGACCACCTACCCCAACATCGCATGTTTCCGGTGGCAAGCTTTTCTAA
AACATTCGTTTGGGCGCGCGGGCCAGGTAAGGGCCTATCTATCGA
UFO04238.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7017-RB | 1560 | CG7017-RB | 88..1161 | 7..1079 | 5255 | 99.4 | Plus |
| CG7017-RA | 1414 | CG7017-RA | 88..1161 | 7..1079 | 5255 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20210691..20211754 | 1079..17 | 5150 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:50:54 has no hits.
UFO04238.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:37 Download gff for
UFO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 84..1168 | 7..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:42 Download gff for
UFO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 128..1212 | 7..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:42 Download gff for
UFO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 88..1172 | 7..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:42 Download gff for
UFO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20210680..20211754 | 17..1093 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:42 Download gff for
UFO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20203780..20204854 | 17..1093 | 98 | | Minus |
