UFO04239.5prime Sequence
1096 bp (981 high quality bases) assembled on 2009-02-18
> UFO04239.5prime
CAGTCGACATGTCGAAGATCAACGTCGTTGTACTTGTGGCCATGTCCGTG
CTGCTCGGTGTCCAGGCTCGGCCTTCCGATTCCCCGGATGCCCATGCCGA
GATCCGGAGCTTTGTCAACGAACTGAAGCAGGAGGATGGCATCTACAATT
ACCAGTTCGAGACGTCCAACGGGATTGCGCAGCAGGAGCAGGGAGTGGGT
GGTTACTACGCTAGCGGCTCATCACAGTACTACACACCCGAGGGCCAGCT
CATCCAGTTGACCTACACGGCAGATGAGAACGGATTCCAGCCGCAGGGCG
AGCACCTGCCCACGCCCCATCCCATTCCCGAGGCAATCCTGAAGTCGCTG
GAGTACAATCGCAACCACCCGGAGGAGGATGGGGAGTACGAGCACCACGA
CCATCACCATGACCACCATGAGCATCACCAGAGCCATGGTCAGGAGCAGG
GCAAGCAGTATCTGCAGCCAGCCGGTGCTCTGCTCGCACCTGCGTCATCG
CCAGTGTTGTCTGTGGGTCAGGTCCTGCCCTACGACAGGAAGCTAGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGC
CTTGCGTTTAATATTTGCCCATGGTGAAACGGGGCGAAGAGTTGTCATTT
GCCACGTTTAAATCAAACTGGTGAACTCCACCAGGGATGCTGAACGAAAC
ATATTCTCATAACCCTTTAGCAATAGCAGTTCACGTACACGCCACATCCT
GCAATATTGTGTAACTGCGAAATCGTCTGATTCCCTTCAGACGAGA
UFO04239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr65Eb-RA | 1004 | CG8638-RA | 79..615 | 9..545 | 2685 | 100 | Plus |
| Cpr65Ec-RA | 566 | CG8634-RA | 187..424 | 130..367 | 290 | 75.8 | Plus |
| Cpr65Az-RA | 720 | CG12330-RA | 527..597 | 259..329 | 205 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7088102..7088626 | 545..21 | 2625 | 100 | Minus |
| 3L | 28110227 | 3L | 7093462..7093699 | 130..367 | 275 | 74.4 | Plus |
| 3L | 28110227 | 3L | 6161396..6161466 | 259..329 | 205 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:07:37 has no hits.
UFO04239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:37 Download gff for
UFO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Eb-RA | 68..620 | 1..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:35 Download gff for
UFO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Eb-RA | 70..622 | 1..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:24 Download gff for
UFO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Eb-RA | 70..622 | 1..552 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:24 Download gff for
UFO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7088102..7088626 | 21..545 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:35 Download gff for
UFO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7081202..7081726 | 21..545 | 100 | <- | Minus |
