UFO04240.5prime Sequence
1133 bp (1019 high quality bases) assembled on 2009-02-18
> UFO04240.5prime
CAGTCGACATGGGTTTGTGCAAGTGCCCCAAGCGCCTGGTGACCAACCAG
TTTTGCTTTGAGCATCGAGTCAATGTTTGCGAACACTGTATGGTTCAGTC
TCATCCAAAGTGCATTGTGCAGTCGTATCTGCAGTGGCTGCGGGACAGCG
ACTACATCTCCAACTGCACTCTGTGCGGCACCACATTGGAGCAGGGCGAT
TGCGTGCGCCTCGTCTGCTACCATGTTTTCCACTGGGACTGCCTGAACGC
CCGCCAAGCCGCACTGCCTGCCAACACAGCCCCTCGGGGTCACCAGTGCC
CCGCCTGCAGTGTGGAGATCTTTCCCAACGCCAACCTGGTCTCCCCGGTG
GCCGATGCTCTGAAGAGTTTCCTGTCGCAGGTTAACTGGGGCAGAAATGG
CCTGGGACTCGCCCTGCTCTCTGAGGAGCAGAGCAGCAGTCTGAAGGCCA
TTAAGCCCAAGGTGGCAAGCCAGGCGGCTGTCAGCAACATGACCAAAGTG
CACCACATCCATTCCGGTGGCGAGCGAGAGCGCACGAAGCCCAATGGCCA
TGACGCCGTGAGCCCACATTCCGTGCTCCTAATGGATGCATTTAATCCCC
CAAGTGCGGGCGACTACGCCAGCAGCAGAAGACCGCTGCTGCCCCGTCAG
TCGCCAATTGGTGGGACAGATCGAGACGATAATAAGTACCAGCGCCGCAC
TCCTGCGGAATTGTTCTCGCGATGGACACGCCGCTTCTATGCGCCCTCCT
CGCGGCCGCCGTGGCGTCGCACTTGGTTCCTGGTGACCGCCGGCATTTTG
GCCTTTGTCTTGTTCGTCTATCTTATGGCCTGTCTGGGTCGCGGAGGATC
TGATGCCGTGCACGAGGGCTGGAATAACCCCATCCACAGCCGAACCACTA
CGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGAGAA
TCCTGTCATGACTAGTGCTGAATCTCACCAATAAAAACGCCCGGCGCAAC
GAGCGTTCTGAACAATTCGATGGAGTCTGAGTCATTACTGAACTATCACG
AATCAAGCGGTCGAATCAAATAGCTCGCCTGCA
UFO04240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5382-RB | 1165 | CG5382-RB | 171..1067 | 9..904 | 4430 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22364671..22364958 | 904..618 | 1360 | 99 | Minus |
| 3R | 32079331 | 3R | 22365019..22365225 | 618..412 | 1020 | 99.5 | Minus |
| 3R | 32079331 | 3R | 22365276..22365469 | 416..223 | 970 | 100 | Minus |
| 3R | 32079331 | 3R | 22365537..22365650 | 222..109 | 570 | 100 | Minus |
| 3R | 32079331 | 3R | 22365712..22365813 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:21:13 has no hits.
UFO04240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:36 Download gff for
UFO04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5382-RB | 163..1065 | 1..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:38 Download gff for
UFO04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5382-RB | 165..1067 | 1..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:26 Download gff for
UFO04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5382-RB | 165..1067 | 1..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:26 Download gff for
UFO04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22364671..22364957 | 619..904 | 98 | <- | Minus |
| 3R | 22365019..22365220 | 417..618 | 100 | <- | Minus |
| 3R | 22365276..22365469 | 223..416 | 100 | <- | Minus |
| 3R | 22365537..22365648 | 111..222 | 100 | <- | Minus |
| 3R | 22365712..22365818 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:38 Download gff for
UFO04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18190393..18190679 | 619..904 | 98 | <- | Minus |
| arm_3R | 18190741..18190942 | 417..618 | 100 | <- | Minus |
| arm_3R | 18190998..18191191 | 223..416 | 100 | <- | Minus |
| arm_3R | 18191259..18191370 | 111..222 | 100 | <- | Minus |
| arm_3R | 18191434..18191540 | 1..110 | 96 | | Minus |
