UFO04243.5prime Sequence
1151 bp (1033 high quality bases) assembled on 2009-02-18
> UFO04243.5prime
CAGTCGACATGAACTACGAGTGTCTTATCGGTGTTCTAAGCTGCCTATTG
GTAGCTCTCCCCAAAGGAAATTGCCACAGCATCAGTGGTTTAAATTCCAC
CTTGAATCTACCAGAGATTCGAGGTGACCAGTTCCTGTACTTTGGATTCG
GAAGCAATATGCTGATCAAGAGAATTCACATCCAGAACCCTTCGGCGGTA
AGAATTGGTCCGGCCCTGCTACCCGATTATCGATTGGACTTTGCCTTGGA
ATCAGCCGGTTGGAGCGGTTCTGTGGCCACCATCGTTCCCACCCAGGGTG
ATCATGTCTGGGGAACCCTCTGGAAGATCGATCTAAGTAATCTGCCGGAT
ATAGACAGTCAAGAAGGCGTTAGTCAAGGCATTTATGAGCCTCGCACCGT
TTACGTAAAACTCCATGGGGAATCTGAATCAACTCCTGCCCGAGCTTATC
TACTGACCAAGCAGCCAGAGAGCAATCTGTACGAACTGCCTAAGGACTCC
ATTCCCTTATCCAGACAGCCCTCGAAAACATATCTGCAATGTCTCGTTAA
AGGCGCTATTGAGAGCTCCGTTCCGGAGGATTATGTTCAGCGATTGAGGA
GCATTAAGCATAATGGACAAGTTAACTCCTATCTGGAACGAAAACTGGAA
CTGGGAGGGGTAACCCTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGCAGCCATCACAAACGGCATGATGAACTGATCGCC
AGCGGCATCAGCACTTGTCCCCTTGCCGTATAATATTTGCCATGTGAAAC
GGGGGCGAAGAAGTTGTCATATTGCCACGTTAATTCAACTGGGTGAAACT
CACAGATGCTGAACGAAACAATATCTCAATACGTTAGCATGCAGTTACCG
T
UFO04243.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4306-RA | 1029 | CG4306-RA | 96..755 | 9..668 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18462719..18463068 | 358..9 | 1750 | 100 | Minus |
| 3L | 28110227 | 3L | 18462231..18462543 | 668..356 | 1565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:28 has no hits.
UFO04243.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:35 Download gff for
UFO04243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4306-RA | 84..753 | 1..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:58 Download gff for
UFO04243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4306-RA | 90..759 | 1..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:55 Download gff for
UFO04243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4306-RA | 90..759 | 1..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:55 Download gff for
UFO04243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18462227..18462540 | 359..673 | 99 | <- | Minus |
| 3L | 18462719..18463073 | 1..358 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:58 Download gff for
UFO04243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18455327..18455640 | 359..673 | 99 | <- | Minus |
| arm_3L | 18455819..18456173 | 1..358 | 98 | | Minus |
