UFO04247.5prime Sequence
1135 bp (1027 high quality bases) assembled on 2009-02-18
> UFO04247.5prime
CAGTCGACATGAACTCACAAAAAGAATACGTATCGGACTGCGAAACCGAC
GATGATTATTATGTCGATTTGTTAACTTCAGGCAAGGGCAGTGATAAGAG
TGAAAGTGATGTGTCGGACAAGTCTGAAAATTATCCAGGCCTAAAATCAA
AGCATACTGCGAAGGCATTGCGGAAAACAAGGCATTGTGACGGCGATAAT
AGGGAATACAGGTCTAAGGAGTGCGACGACCTTCATTCCGAAGAGGAGTC
TGAAAAATCGCGGTCGGATGCTTTATGGGCCGATTTTCTTGGCGACATTG
ATACTAAAAGCGTAATCAACCAAAAAACAGATTATACGGAGGGAAACGCA
GCAAGTGCTACCAATACCAATACGCATGAGACTTGTAATAAATATGATAA
AAACGATACGGCAATAATAAAAACTGCACAGCAATACGATTCCAAAAGAA
CCACGCTTTCAGTTTCCACACTCGGAAAAATTAAACGATCATCCGCTGAA
AAGAGTATCGGTACCATGATAAATAAATTTGAAAAGAAGAAAAAATTGAC
AGTGCTTGAAAGGTCACAATTGGATTGGAAAATATTTAAACAAGACGAAG
GCATAGACGAACTTCTGTGCTCGCATAACAAAGGCAAGGACGGGTATTTG
GACCGTCAAGACTTTTTGGAGAGAACCGATCTTAGGCAGTTTGAAATGGA
AAAGAAGTTGCGGCTGTCTCGCAGGCCATACGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGTCATTACTGGATCTATCACAGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAACCGGCATGATG
GACCTGATCGCCAGGCGCATCAGCACTTGGTCGCCTTGGTATAAATATTG
CCACGGGTGAAACACGGGGGGCGAAAAAATGGTCC
UFO04247.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yeti-RB | 1576 | CG40218-RB | 35..757 | 9..731 | 3615 | 100 | Plus |
| Yeti-RA | 899 | CG40218-RA | 35..757 | 9..731 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1344449..1345085 | 645..9 | 3185 | 100 | Minus |
| 2R | 25286936 | 2R | 1344294..1344382 | 731..643 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:43:53 has no hits.
UFO04247.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:21 Download gff for
UFO04247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 22..755 | 1..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:37:47 Download gff for
UFO04247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 27..760 | 1..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:07 Download gff for
UFO04247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 27..760 | 1..735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:07 Download gff for
UFO04247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1344291..1344381 | 644..735 | 97 | <- | Minus |
| 2R | 1344451..1345093 | 1..643 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:37:47 Download gff for
UFO04247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 470924..471014 | 644..735 | 97 | <- | Minus |
| 2RHet | 471084..471726 | 1..643 | 99 | | Minus |
