UFO04248.5prime Sequence
1069 bp (984 high quality bases) assembled on 2009-02-18
> UFO04248.5prime
CAGTCGACATGTCCGAGGTAGCTGCAGCAAATGGAAGCCCCTCCCCAGCG
CCAACTCCTGAGGTGCCCGCTACCGAGTTGGCCCAATTGGCGCTGGAGGA
TGAGCCCAAGGTTAGCTTTTCGGATCAGTTCAAGGCCTTCTCCAAGTTCG
GGGACTCCAAGTCCGATGGCAAGCTGATAACGCTGTCGCAGAGTGACAAG
TGGATGAAACAGGCCAAAGTTATCGACAAGAAGATCACCACCACGGATAC
AGGCATCCACTTCAAGAAGTTCAAGGCCATGAAGATCTCGCTCAGCGACT
ACAACAAATTCCTGGACGATCTGGCCAAGACGAAAAAGGTGGAGCTGTCG
GAGATCAAGCAAAAGTTGGCCAGTTGTGGAGCTCCAGGAGTTGTGTCCGT
TTCGGCTGGAAAAGCCGCAGCTGCCGTGGATCGATTGACGGATACGAGCA
AGTACACCGGTTCCCACAAGGAGCGTTTCGATGCCTCCGGAAAGGGCAAG
GGTATCGCGGGCAGACGGAACGTGGTCGATGGATCCGGATATGTGAGTGG
CTACCAGCACAAGGACACCTACGACAATGCCCACGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGACCTGATCGCAGCGGCATCAGCACTTGTCGCTTGCGTATATATTT
GCCCATGTGAAAACGGGGCGAGAGTGTCATATTGGCCACGTTTAAATCAA
CTGGTGACTCACCCAGATGCTGAAACGAAAACTATTTCTCATTATCCTTT
AGGAATAGCCAGGGTTTCA
UFO04248.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45057-RB | 1169 | CG45057-RB | 151..727 | 8..584 | 2885 | 100 | Plus |
| CG45057-RD | 869 | CG45057-RD | 137..713 | 8..584 | 2885 | 100 | Plus |
| CG45057-RC | 840 | CG45057-RC | 108..684 | 8..584 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16355633..16356030 | 405..8 | 1990 | 100 | Minus |
| 3L | 28110227 | 3L | 16355188..16355372 | 584..400 | 910 | 99.5 | Minus |
Blast to na_te.dros performed 2014-11-28 19:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 6959..7009 | 75..126 | 113 | 71.2 | Plus |
UFO04248.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:20 Download gff for
UFO04248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4893-RA | 127..710 | 1..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:47 Download gff for
UFO04248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4893-RC | 100..684 | 1..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:07 Download gff for
UFO04248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45057-RC | 100..684 | 1..584 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:07 Download gff for
UFO04248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16355634..16356039 | 1..404 | 99 | | Minus |
| 3L | 16355188..16355367 | 405..584 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:47 Download gff for
UFO04248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16348288..16348467 | 405..584 | 100 | <- | Minus |
| arm_3L | 16348734..16349139 | 1..404 | 99 | | Minus |
