UFO04249.5prime Sequence
1117 bp (1015 high quality bases) assembled on 2009-02-18
> UFO04249.5prime
CAGTCGACATGGAGATGATGCATGGAGCGTCGCTGCTGTCGCGGCCAGCG
GAGGAATTTGGCAACGACACCCTGGTGGAGGAAATGTGGGCCGCAAAAGC
TCTGGAACACGCCGAGGTGCACTTTAATCTCATCACCAGCGTCCATCCCT
CCCAGCTGAAGCTCACGCCCTACGACGACCAGATATACGCCACTTTCCGG
CAGGATTTTCCCGATCTTCACGTTGGCCGGCTTACCGATGATATTCTCAA
ATCCGCCACGGCGAAGCTCAAGTGGCGCCAGTTCGCCGAGAAGTTTAACA
AGTTGGACGATTACTCGTATGGCACCCTGATGCGCGCCGATGCCAGCAGG
GAATTCTCCCCGGACAACTCTATCTTCGTGTTTCGCGTCCAGTTTCTGGC
AATCGAGATTGCCCGGAATCGGGAGGGACTCAACGATGAGGCTTACGAGA
AGCACAAGCCCGCCAGAAAGGTACCCGAAGAGGAACAGGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG
GCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGCTGAGACGA
AAACATATTCTCAATAAACCCTTTAGGAATAGCCAGTTTCACCGTACACG
CCACATTCTTGCGAATATATGTGTAGAACTGCGAATCGTCTGCTATTCCA
CTCAAGAGCGATGAAACGTTCAGTTTGCTCATGAACGGTGTACAAGGGTG
AACACTATCCCAATTAC
UFO04249.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7519-RA | 710 | CG7519-RA | 103..582 | 9..488 | 2385 | 99.8 | Plus |
| CG7519-RB | 683 | CG7519-RB | 223..555 | 156..488 | 1650 | 99.7 | Plus |
| CG7519-RB | 683 | CG7519-RB | 103..224 | 9..130 | 610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21493420..21493779 | 129..488 | 1785 | 99.7 | Plus |
| 3L | 28110227 | 3L | 21493247..21493355 | 20..128 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:40 has no hits.
UFO04249.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:31 Download gff for
UFO04249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7519-RA | 97..579 | 9..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:06 Download gff for
UFO04249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7519-RA | 103..585 | 9..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:07 Download gff for
UFO04249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7519-RA | 103..585 | 9..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:07 Download gff for
UFO04249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21493235..21493355 | 9..128 | 96 | -> | Plus |
| 3L | 21493420..21493779 | 129..488 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:06 Download gff for
UFO04249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21486335..21486455 | 9..128 | 96 | -> | Plus |
| arm_3L | 21486520..21486879 | 129..488 | 99 | == | Plus |
