UFO04251.5prime Sequence
1137 bp (1021 high quality bases) assembled on 2009-02-18
> UFO04251.5prime
CAGTCGACATGGGTGATTGGGCTAAAAAAGCAGAGGACCAGGAGGTTTCT
AAGCTGGTCGACAAACTTAACCTAGACTCTAAATCTGGAGAAGAAACCGA
TTTCGACGTCGCTGATCCAGCTGAAACAAGTCTCCTCATAAAAATACTAG
GAAAGGGGCTGGTGAACACAAAGCTATCTCTCGACATTCAACAAAAAAAT
CCGAATTCACCCTTACATTCCGTGAAAACATTTGAAGCCTTACACCTAAA
AGCATCTCTGTTAAAGGGAATTTACGCAATGGGGTTTAATACTCCATCAA
AAATTCAAGAAACAGCGTTGCCAACTCTTCTCGCAGATCCACCGCAAAAT
ATGATAGCACAAAGCCAGTCTGGGACAGGCAAAACAGCCGCATTTGTATT
GGCCATGCTTAGCCGAGTCAACGTTTGTTTAAATCATCCTCAGGTTCTGT
GTTTATCCCCTACGTACGAGTTGGCAATTCAAACTGGAGAAGTGGCTGCG
CGAATGGGACAATTTTGTCGGGAAATAAAGCTAAGATTTGCAGTACGCGG
AGAAGAGGTTGATCGCAGTAAAAAAATTGAAGAACACATTTTGATTGGCA
CCCCAGGAAAACTTTTGGATTGGGGAATAAAATTTCGTTTATTTGATATG
AAGAAAATATCCGTTTTTGTATTGGATGAAGCAGATGTAATGATAGCCAC
CCAAGGTCATCATGATCAATGCATTCGAATACACAAAATGCTGAATCCAC
ATTGCCAAATGTTGTTTTTCTCTGCTACTTATGGTAAAGAGGTTATGGAC
TTTGCTCGGCTGATTGTTGCAGATCCCACAATAATAAGACAAAAAGAACT
GCTGCTTGGCTTGCAGCAAAAGCAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGTCATAATCATAATCATATCATAATCATAATCACA
CTAGCCTAGAGATCCTGTCATGACTAGTGCTTGGATTCTCACATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACATTCAGATGGAGTTCTTGAGTC
ATTACTGGATTTTATCAACAGGAGTCAGGCGAGCCTCGATTCAAATTACG
CCCGGCTGCACTCTATCGCAGTACTGTGTGTATTCAT
UFO04251.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp80-RG | 1564 | CG17023-RG | 58..890 | 7..839 | 4165 | 100 | Plus |
| Dbp80-RE | 1505 | CG17023-RE | 58..890 | 7..839 | 4165 | 100 | Plus |
| Dbp80-RD | 1203 | CG17023-RD | 58..890 | 7..839 | 4165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 27293076..27293273 | 248..445 | 990 | 100 | Plus |
| 3L | 28110227 | 3L | 27332168..27332346 | 558..736 | 895 | 100 | Plus |
| 3L | 28110227 | 3L | 27292882..27293013 | 116..247 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 27331992..27332108 | 442..558 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 27350220..27350321 | 737..838 | 510 | 100 | Plus |
| 3L | 28110227 | 3L | 27279480..27279539 | 56..115 | 300 | 100 | Plus |
| 3L | 28110227 | 3L | 27279373..27279424 | 7..58 | 260 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:09:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 1326..1385 | 638..697 | 111 | 65 | Plus |
UFO04251.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:30 Download gff for
UFO04251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RA | 68..932 | 7..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:03 Download gff for
UFO04251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RE | 58..890 | 7..840 | 99 | <- | Plus |
| Dbp80-RE | 1028..1058 | 841..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:44 Download gff for
UFO04251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RD | 58..890 | 7..839 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:44 Download gff for
UFO04251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 27332169..27332346 | 559..736 | 100 | -> | Plus |
| 3L | 27350220..27350321 | 737..838 | 100 | -> | Plus |
| 3L | 27420679..27420711 | 839..871 | 100 | | Plus |
| 3L | 27279373..27279422 | 7..56 | 100 | -> | Plus |
| 3L | 27279481..27279539 | 57..115 | 100 | -> | Plus |
| 3L | 27292882..27293013 | 116..247 | 100 | -> | Plus |
| 3L | 27293076..27293271 | 248..443 | 100 | -> | Plus |
| 3L | 27331994..27332108 | 444..558 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:03 Download gff for
UFO04251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 2473205..2473306 | 737..838 | 100 | -> | Plus |
| 3LHet | 2543666..2543698 | 839..871 | 100 | | Plus |
| 3LHet | 2409909..2409958 | 7..56 | 100 | -> | Plus |
| 3LHet | 2410017..2410075 | 57..115 | 100 | -> | Plus |
| 3LHet | 2423418..2423549 | 116..247 | 100 | -> | Plus |
| 3LHet | 2423612..2423807 | 248..443 | 100 | -> | Plus |
| 3LHet | 2454979..2455093 | 444..558 | 100 | -> | Plus |
| 3LHet | 2455154..2455331 | 559..736 | 100 | -> | Plus |
