UFO04255.5prime Sequence
1135 bp (1034 high quality bases) assembled on 2009-02-18
> UFO04255.5prime
CAGTCGACATGGATTCTATTTTTCTGGTAGACACAACAGGACGCCAGGAA
TTCAATGGCGAGCAGCAGCAAAAGAAGATTGTGTACAACAAAGAGCTGCT
CCTGACAGAAAGTGACGCGCACAGCGAGGAGGACGAGGAACAAAATGAGG
GCGCAGTGGAGCTCTTTGGCCTAAAGTTGAACTCCAAGGAAGTGCTCGAT
GTCGTGAATTCCCTGCCTGACCGAAAGAAGCCGGTATCCAAGGTTGCCAA
GCAGCTGGAGGACCTCTGCGAAAAGGTCGAGAGTGCAGTGGAGAACTCCA
GCAAACCGAAAGTAGTGCCCCGGAAGCGGGTAACAGAACTGAACCACGAT
GCTCCGCATCTGGACCTGCGGCAGGAAAACCTGGAAAGTAATATGAAGAG
GACGAAACAGGCCTTGAATCCAGGACTAGAACAGGCGCATGCACTGCCCA
CCGTGGGAAAGAGGCAGCAACCCATCATCAACAGAGCTGAACGCTCAAAG
ACCAAGGGCAAGGGATGGTTTAATCTGCCCGCCACAGAGATCACCGACGA
GATGCGAAACGAACTGAAAATAGTTCAGATGCGATCGGTTCTGAACCCTA
AGCAATTCTACAAGAAGAACGACCTTAAGAGTCTGCCCAAATTTTTCCAA
ATCGGTACTGTGCTACCTTCGCATTTGGATCACTACCAAGAAAAGAAGTC
CAAGAAGAAGCAGTCGCTGGTAAATGAGTTGTTAGAAGACGAGAGCTTCC
AGAAGTTCAACAAGAGGAAGTTCAACGAGGTTATTAAGCGCACAGACAAA
TACGCCTATCGGAAAAACTTGAAGAAAATGAAAAAACTTAAGAAAAATAA
AGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGATTCTCCCCAATAAAAAACGCCCGCGGCACCG
AGCGTTCTGAACAATTCAGATGGAGTTCTGAGGTCATACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGAATCAAATACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTTTATTCATAAGGCATCTCGCCGC
UFO04255.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1142-RA | 911 | CG1142-RA | 45..887 | 9..851 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7473260..7473737 | 486..9 | 2390 | 100 | Minus |
| 3R | 32079331 | 3R | 7472482..7472847 | 851..486 | 1830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:30 has no hits.
UFO04255.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:29 Download gff for
UFO04255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 32..883 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:32 Download gff for
UFO04255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 39..890 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:21 Download gff for
UFO04255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 39..890 | 1..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:21 Download gff for
UFO04255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7472478..7472847 | 486..855 | 99 | <- | Minus |
| 3R | 7473261..7473743 | 1..485 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:32 Download gff for
UFO04255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3298200..3298569 | 486..855 | 99 | <- | Minus |
| arm_3R | 3298983..3299465 | 1..485 | 99 | | Minus |
