UFO04256.5prime Sequence
1141 bp (1009 high quality bases) assembled on 2009-02-18
> UFO04256.5prime
CAGTCGACATGACGACTGCGGCGAAAGTAATCTTGGCCTGCTGCCTGCTG
GGCGCCTTCCACATTCAGATCAGCTCGTCATCGGCCATTCCCATCTGGGA
GTTCCTGACCCGCAACGAGAAGATGTCCCACCTCTACTCAACATTCGCTC
AATTGGTAAGCGTGCACTGCAAGTCAACAGCCGCCGTCGGAGGCCTCCCA
GTGAACCAGTGCAAGCACAACCTGCTCGGTTACGGGTCCGCCAAGCTGCA
GACGCTCTCCGACGTACAGCTGGAGGCACTAGATCCGTATCAGCGCGATG
CCAACGAGCTGATCTGGTCATCGATTATGGGGGACCATCCGAGCGGAGCC
AGCCTGGTGACAACGAGGCAGCCGCTCCAACAGCCCCTGCCAACTCCTCC
TGCGTCCTCTCTGATCATCCTAACGCGCCAGCAACTTCCGCACGGAGCAT
CCCATGCCCACCCCATCCAGAGCTCCGGCTCCGCCACCAATCCAATCTTC
GAGAGCGGCGAGCAGAAGCACAAATACGCCATGGACATGGACAAGGCCTA
CGGCTACGGGCCGCAGTCCAGCAGTGAGCTCCCAATGGCCGCCGCACTGA
CTTCAGAACCGTCCAAAAGATTCCTCACCGGACCTTTGGTGATCCGGGTG
CGACCCGATGGCTCCCCGGTGGAGGAGGACAAGATGATGCCACTGCCGCG
GGACGAAGACCTGCCCTACTTTCATCTTGGTCTGGCCGCCGCTCAGCCCA
ACAGGCACCGCAAGATCGCCACAATCAGCTCCTTAAAGCAGCAGCACTTC
GCCTCTATCCTGCAGAGCGACCTCCAGCCACCCCACCAGACGCAGAGGCG
TCTGTTCCGCCAGCAACAGGCGGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAGTGGTCATAATCATAATCATAATCATATCATATCAC
ACTAGCCTAGAGATCCTGGTCATGACTAGTGCTGCATCTCACCATAAAAA
CGCCCGGCGGCACGAGCGTTCTGAACAAATCCGATGGAGTTCTGAGTCAT
ACTGATCTATCAACAGAGTCAGCGAGCCTCGAATTCAATACGCCCTCGGC
CTGCCACTCTATCGAATCTGTGAATCATAAGCACTTCTGGC
UFO04256.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Reg-5-RA | 1653 | CG2928-RA | 506..1370 | 8..872 | 4325 | 100 | Plus |
| Reg-5-RB | 1781 | CG2928-RB | 939..1498 | 313..872 | 2800 | 100 | Plus |
| Reg-5-RB | 1781 | CG2928-RB | 506..810 | 8..312 | 1525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24788291..24788850 | 872..313 | 2800 | 100 | Minus |
| 2R | 25286936 | 2R | 24788979..24789170 | 312..121 | 960 | 100 | Minus |
| 2R | 25286936 | 2R | 24792791..24792905 | 122..8 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:15 has no hits.
UFO04256.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:28 Download gff for
UFO04256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Reg-5-RA | 496..1370 | 1..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:37 Download gff for
UFO04256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Reg-5-RA | 500..1374 | 1..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:48 Download gff for
UFO04256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Reg-5-RA | 500..1374 | 1..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:48 Download gff for
UFO04256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24788287..24788850 | 313..877 | 99 | <- | Minus |
| 2R | 24788979..24789168 | 123..312 | 100 | <- | Minus |
| 2R | 24792791..24792908 | 1..122 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:37 Download gff for
UFO04256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20675810..20676373 | 313..877 | 99 | <- | Minus |
| arm_2R | 20676502..20676691 | 123..312 | 100 | <- | Minus |
| arm_2R | 20680314..20680431 | 1..122 | 96 | | Minus |
