UFO04258.5prime Sequence
1135 bp (1029 high quality bases) assembled on 2009-02-18
> UFO04258.5prime
CAGTCGACATGTTACAGGCTATAAAGACGCTCCGCTGGACACAGCCAATG
CGGGCTCTGTCCACGGTAAACACCAGTTCCGGCGTACAAGGCAATCTTTC
ACCTGCGGCACCTGCTCCGGAACCGGATAAACTCTACAGCAAGCTGGAGA
TTGAGCTGCGGGGTATTGATCCGGCAGTTCTGAAGAGCTACACCTGGTTT
GCTACTACTGCTGCCGAGCATTTGGGCATTGAAAAGGGAAAATGTTGGTC
ACCTCGCAAGGCGCACCACGAGCGGATGACGCTCCTGAAGTCGGTGCATA
TCTACAAGAAACATCGCGTACAGTACGAGGTGCGAACCCACTTCCGCTAT
ATGAACTTCCACAAGTTGACGGGCTCCACGCTAGATACATTTCTAGAGTA
TATTGAACGTAATCTGCCCGAGGGCGTAGCGCTGCAGGCTTCCAGGACTG
AGCTGCAGGAGATCCCAGAGCACTTGCGCCAGCCGCCGGAGCAAGTTGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTTGT
CCATATTGCCACGTTTAAATCAAAACTGGTGAAACTCACCAGGGATTGCT
GAGACGAAAAACATATTTCTCATAAACCCTTTAGGGAATAGCCAGTTTTC
ACCGTTAACACGCCACATTCTTGCGAATATATGTGGTAGAACTGCGAAAT
CGTCGTGCATTCCACTCCAGAGCGAATGAAAAACGTTTCAGTTTGCTCAT
GAACCGGGTTAACAAGGTTAACCCATATCCAATAT
UFO04258.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS10-RA | 723 | CG4247-RA | 68..556 | 9..497 | 2445 | 100 | Plus |
| mRpS10-RB | 746 | CG4247-RB | 97..579 | 15..497 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15230096..15230349 | 244..497 | 1270 | 100 | Plus |
| 3R | 32079331 | 3R | 15229798..15230027 | 15..244 | 1150 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:21:04 has no hits.
UFO04258.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:34 Download gff for
UFO04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34316-RB | 58..550 | 9..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:30 Download gff for
UFO04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS10-RA | 68..560 | 9..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:22 Download gff for
UFO04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS10-RA | 68..560 | 9..503 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:22 Download gff for
UFO04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15229791..15230027 | 9..244 | 98 | -> | Plus |
| 3R | 15230097..15230349 | 245..497 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:30 Download gff for
UFO04258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11055513..11055749 | 9..244 | 98 | -> | Plus |
| arm_3R | 11055819..11056071 | 245..497 | 100 | == | Plus |
