UFO04260.5prime Sequence
1077 bp (1016 high quality bases) assembled on 2009-02-18
> UFO04260.5prime
CAGTCGACATGGCCGATGAGACCAGCACTAAGACCAGAACTATGCGCCTG
GGAATGTGCGAGGTGTGCGCCGCAAAGGAGGCCTGCTACGCATGTCCCAA
ATGCGAGGTGAAAACATGCAGCCTGCCCTGCGTCCAGATCCATAAGAAGG
AGCTCAACTGCGATGGCCAGCGGGATCGCACCAAGTTCGTACCGCTGAGC
GAGATGACCTCGCGGGAATTCATGAGTGACTACTGCTTCTTGGAGGAGTG
CACACGCTATGCAGAGAATCGAAAATCCGATCCGTGCAAGCGATTTACCC
ACGACCAAAGGAATCTCCCAGTGACTCAACATCGCATGCGGATGGCAGCC
AAGAAGCGTAACATTAATCTGCGCTTGCAACTGGAGAATTTCAGTCGGCA
CAAGGAGAACACCACGTATCTAAACTGGAAACTGGGACGATTCCATTGGC
GTATAGAGTGGCTGTTTGCAAATATTCCATACGAGGCAAGCCTTCCCCGG
AATGTAACTCGATTTGTGGACAAGGAATGCAATGAGGAGCTCACGCTGCC
CGATCTGGTAGCCAAGTATGTGGATCTGCGGCACGAGACGGCACGGGAAC
AACGCAAACTGCTGGCCAACCATCAGACTGCCGGTATTGGTCAGCTGAGT
TTTTGGCTTAGAGCCGAGGGCGTGCGACGCAGCTCTACGAGGTGTTATCT
CCTGGACTCGACCAAAACGCTGGCCGAGAATCTAGTCGGCAAAACCATCG
TGGAGTTTCCCACCATTTTGGTCACCTACGATCCGAAGCCACCAGGAGGA
TATGAAGCCATCGACAGCAGTGAGGAATTCGAGGAAGAGCACGAAGAGCA
TGTGCCTGTAACCAAACCAGGAACATCCTCAACGCAGTTGCGGAGACTTA
GATGATTCACATGATGTGTACTATAAACTGGCTGCAGCATTTGCTGGTGA
AGATGTTAGTGAGACTGAAGACGACGAGATCGAGCACTCTACAGACAAGT
GTTGTACTGCAAGCTTTCTAGACATTCGTTTGGCCGCGCGGGGCCCAGGT
AAGTGGTCATAATTCATAAATTCAAAT
UFO04260.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1463-RB | 1234 | CG1463-RB | 49..1065 | 1..1009 | 4865 | 99 | Plus |
| CG1463-RC | 1293 | CG1463-RC | 108..1124 | 1..1009 | 4865 | 99 | Plus |
| CG1463-RA | 1526 | CG1463-RA | 49..1065 | 1..1009 | 4865 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12610687..12611473 | 821..35 | 3935 | 100 | Minus |
| X | 23542271 | X | 12610475..12610634 | 977..820 | 685 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:07:27 has no hits.
UFO04260.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:00:32 Download gff for
UFO04260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1463-RA | 40..1056 | 1..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:29 Download gff for
UFO04260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1463-RA | 49..1065 | 1..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:17 Download gff for
UFO04260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1463-RA | 49..1065 | 1..1009 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:17 Download gff for
UFO04260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12610438..12610634 | 820..1009 | 95 | <- | Minus |
| X | 12610689..12611470 | 38..819 | 100 | <- | Minus |
| X | 12611523..12611560 | 1..37 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:29 Download gff for
UFO04260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12504471..12504667 | 820..1009 | 95 | <- | Minus |
| arm_X | 12504722..12505503 | 38..819 | 100 | <- | Minus |
| arm_X | 12505556..12505593 | 1..37 | 94 | | Minus |
