UFO04262.5prime Sequence
1126 bp (1007 high quality bases) assembled on 2009-02-18
> UFO04262.5prime
CAGTCGACATGACGGATCTTATCAGGCAGGGTGCTCTGTTCCTTATGAGC
GAGAAGTGCTATGATAACTACTTCCTCTATCACAACTTTTTAGATGTTCC
GTGCTTCAAGGCTTTGCTGAGCAAGGGCTTGGGATTGGCAATTATCGCAG
GTTCCGTGCTGGTCAAAGTACCACAAGTGCTGAAGATCCTTAACAGCAAG
TCTGGCGAGGGCATCAACATTGTGGGCGTAGTGTTGGACTTGCTGGCCAT
CTCCTTCCACCTGTCGTACAACTTTATGCATGGCTATCCGTTTAGTGCCT
GGGGCGACAGTACCTTTCTGGCCATCCAGACCGTCACAATCGCCGTCTTG
GTCTTGTTCTTCAACGGGCGCAAGGCGCAGTCGGGACTCTTTCTAGTGGG
ATATGTCGTGCTGATGTATGTTCTCAATTCGGGGCTAACGCCCATGTCGG
TGCTGTTCACCATCCAGAGCTGCAACATTCCCATCCTGCTGGTGGGCAAG
CTGTCTCAGGCGTATACCAACTACCAGGCTGGATCCACTGGTCAGTTGTC
AGCCGCCACTGTGATCATGATGTTTGCAGGATCGGTGGCCCGCATCTTCA
CCTCCATCCAGGAGACTGGTGACTTTATGATCATCCTCACTTTCATTGCC
TCTACCTTTGCCAATTCGGTTATTCTGGGCCAGCTGATCTACTACTGGAA
CAAACCCGCTGGCGTCAAGGTGAAGGATTCAAAGGCCAAGAAGCCGAAGA
CCAAGAAGGATGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATTTATCACAGAGTCAGCGAGCTCGATATCAAATTACGCC
CCGCCTGCCCTCATCGCAGTACTGTTGTAATTCATTAGCATTCTGCGACT
GGAAGCCATCACAAACGGCATGGATGACTGATCGCCAGCGCATCAGCACC
TTGTCGCCCTTGCATATATTGCCCAT
UFO04262.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3792-RA | 1194 | CG3792-RA | 287..1042 | 9..764 | 3765 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4977747..4978415 | 96..764 | 3330 | 99.9 | Plus |
| 2L | 23513712 | 2L | 4977598..4977685 | 9..96 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:08:29 has no hits.
UFO04262.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:17 Download gff for
UFO04262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-RA | 275..1035 | 9..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:13 Download gff for
UFO04262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-RA | 287..1047 | 9..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:06 Download gff for
UFO04262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3792-RA | 287..1047 | 9..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:06 Download gff for
UFO04262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4977598..4977685 | 9..96 | 100 | -> | Plus |
| 2L | 4977748..4978420 | 97..770 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:13 Download gff for
UFO04262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4977598..4977685 | 9..96 | 100 | -> | Plus |
| arm_2L | 4977748..4978420 | 97..770 | 99 | == | Plus |
