UFO04263.5prime Sequence
1153 bp (1042 high quality bases) assembled on 2009-02-18
> UFO04263.5prime
CAGTCGACATGAGCGCGGGAAAACGTGGAGCGTTGATAATATTTGAAGGA
TGTGATCGAAGTGGAAAGACCACTCAAAGCAGGCTGTTGGTTGAACTCTT
GAAATCGAAGGGCATTCCGACATTGCCCATGAATTTCCCGGAACGCAGTT
CCAGCATTGGTCAGGTGATAAACTCCTATTTAACGAACAGCAAGGATCTT
CCGGATGAGGTGATTCACTTAATGTTCTCCGCCAACCGCTGGGAGCACAT
AAACCAGGTGAAGGAGAAGCTGCTTGAGGGCACCACATTGGTTGTGGATC
GATATTCGTTCTCTGGCGTGGCATATAGCGCAGCCAAAGGATTAGACTTT
GATTGGTGCTATGCTCCGGAAAGGGGGCTCATAAAACCAGATGCTGTATT
TTACCTAAGAGCACCACCAAACGACCTTACACATCGAGGACAATACGGCA
AAGAGCGTTATGAGAAAGTAGAATTCCAAGGTCGTGTGGCCGAAGTATTC
AACCGCATTTGCTCCAAGGAGGGCAGCTATTTTCACCAGTTCGATGCCAG
ACAGTCTGTAGAGGATTTACATGCCCAGATAGCGAGCATTACGGAGGAAC
TCCTGCCCAAAGTGGCCACCCGACCTCTGGACACGTTATCGGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGACCTGATCGCCAGCGGCATCAGCACCTTGTCGCTTGCG
TATAATATTTGCCCATGGTGAAACGGGGCGAGAGTGTCATATTGCACGTT
AAATCAACTGGTGAACCACCAGGATTGCCTGAAACGAAAAACTATTCTCA
TAACGTTAAGAAATAGCCAGGGTCCGTAACGCCACTTGGGAATTATGTGT
AGA
UFO04263.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5757-RB | 992 | CG5757-RB | 167..799 | 9..641 | 3165 | 100 | Plus |
| CG5757-RA | 897 | CG5757-RA | 72..704 | 9..641 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18094165..18094532 | 457..90 | 1840 | 100 | Minus |
| 2R | 25286936 | 2R | 18093916..18094100 | 641..457 | 925 | 100 | Minus |
| 2R | 25286936 | 2R | 18094584..18094665 | 90..9 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:16:56 has no hits.
UFO04263.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:14 Download gff for
UFO04263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5757-RA | 34..679 | 1..647 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:31 Download gff for
UFO04263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5757-RA | 63..708 | 1..647 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:55 Download gff for
UFO04263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5757-RA | 63..708 | 1..647 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:55 Download gff for
UFO04263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18093912..18094099 | 458..647 | 98 | <- | Minus |
| 2R | 18094165..18094531 | 91..457 | 100 | <- | Minus |
| 2R | 18094584..18094669 | 1..90 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:31 Download gff for
UFO04263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13982089..13982174 | 1..90 | 95 | | Minus |
| arm_2R | 13981670..13982036 | 91..457 | 100 | <- | Minus |
| arm_2R | 13981417..13981604 | 458..647 | 98 | <- | Minus |
