UFO04265.5prime Sequence
1131 bp (1024 high quality bases) assembled on 2009-02-18
> UFO04265.5prime
CAGTCGACATGTCTCTGAATGGCAGTGAAAAGGTGAACACCGAGAAGCTA
GCGGCTATGTGGATGTATGCCACCCAGATGGGAAGCCTGCCGCCAACAGT
CCGCAAACTGACGCCTCCATCGCGGCAGATCATGCTCATTCCCTCCACCG
CTGGCAATGGGATGGCACCACCACCGCCCACACGCTTGCCACCTCCGCCT
CCGGGCGCCAGAGCTGGACTTCTGCTTCCCGTGCCCCCGCTGCCGGCGCA
GTACCGTGGAATGACCCTTCCCTACATGCGACCTGGGCCCGGATCCGTGA
CCTACGCCCACCCGGCTAGCCTAAGCGGGACATACCGGACTCACAAGAGC
ACAAAGTCAGCGGAGATCAATGGGCAGCGAAGACGGCGGCGGGCGGGAAA
GTCTGATGCCAATCGCCGGCAGCGCCGAAAATCGGAAGCGGATGTCCTGG
ACGGTGCTCCCAATTTCCAGTATACGGGTCTAGATCGAGCCATAGCTGAT
AGCTTTTTGGCCAGGCAAGAACAGTCACAGGCGGGCAGTCACGTCGACTA
TTCGTCGTCTGCCTCCTCGGACTTGTACGGCGGTCAGAGGGCATCCTTCA
AAACGAAGATCGTTTGCCGGGATGTGGTGATGGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCGCCCTGCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACTTGTCGCTTGCGTAATAATATTT
GCCATGTGAAACGGGGGCGAAGAGTTGTCCTATGCACGTTTAATCAACTG
GTGAACTCACCAGGATTGCTGAAACGAAAACATATTCTCATACCCTTTAA
GATAGCAGGTTCCGTACGCCACTTGCAATTT
UFO04265.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17600-RC | 973 | CG17600-RC | 141..764 | 9..632 | 3120 | 100 | Plus |
| CG17600-RB | 1069 | CG17600-RB | 237..860 | 9..632 | 3120 | 100 | Plus |
| CG17600-RA | 2470 | CG17600-RA | 1638..2261 | 9..632 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22541344..22541815 | 161..632 | 2360 | 100 | Plus |
| X | 23542271 | X | 22540938..22541068 | 31..161 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:22 has no hits.
UFO04265.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:13 Download gff for
UFO04265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17600-RB | 175..805 | 1..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:17 Download gff for
UFO04265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17600-RA | 1631..2261 | 1..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:25 Download gff for
UFO04265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17600-RA | 1631..2261 | 1..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:25 Download gff for
UFO04265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22540940..22541068 | 33..161 | 100 | -> | Plus |
| X | 22541345..22541815 | 162..632 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:17 Download gff for
UFO04265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21942776..21942904 | 33..161 | 100 | -> | Plus |
| arm_X | 21943181..21943651 | 162..632 | 100 | == | Plus |
