UFO04267.5prime Sequence
1139 bp (1008 high quality bases) assembled on 2009-02-18
> UFO04267.5prime
CAGTCGACATGGCGTGGCGATCCGTGGGAGCCAATAATGAAGACCTGATT
CGCCAACTGAAGGATCACGGCGTCATTGCAAGTGATGCGGTGGCCCAGGC
GATGAAGGAAACCGACCGCAAGCACTACTCTCCGCGCAACCCCTACATGG
ACGCCCCGCAACCCATTGGAGGAGGTGTCACCATCAGTGCTCCTCACATG
CATGCCTTCGCCTTGGAGTATCTACGCGACCACTTGAAGCCCGGTGCACG
TATACTGGATGTGGGCTCTGGATCTGGCTACCTCACAGCCTGCTTCTATC
GTTACATCAAGGCTAAGGGCGTTGATGCGGACACCCGAATCGTGGGCATA
GAGCACCAGGCAGAGCTGGTGCGGCGGAGCAAGGCCAACTTAAACACCGA
CGACCGTAGCATGCTGGACTCCGGCCAGTTGCTGATCGTCGAGGGTGACG
GCCGCAAGGGATACCCCCCGAACGCCCCGTATAATGCAATCCATGTAGGA
GCAGCTGCTCCCGACACACCCACCGAACTCATCAACCAACTGGCCAGCGG
CGGACGCCTGATAGTTCCAGTCGGTCCCGACGGCGGGTCTCAGTACATGC
AACAGTACGACAAGGACGCCAATGGGAAGGTGGAGATGACACGTCTCATG
GGCGTAATGTACGTCCCTCTCACGGATCTTCGCTCCGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGCGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATACGCCCCGCCCTGCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCTTCACAAACGGCATG
ATGAACCTGAATCGCCGCGGCATCAGCACCTTGTTCGCCTTGCGGTATAA
TATTTGCCATGGTGAAAACGGGGGCGAGAGTTGTCCTATTTGGCCCGCTT
AAATCAAACTGGTGAAATTCCCCAGATTGCCTGAAACGA
UFO04267.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pcmt-RA | 953 | CG2152-RA | 133..811 | 8..686 | 3395 | 100 | Plus |
| Pcmt-RC | 998 | CG2152-RC | 133..730 | 8..605 | 2990 | 100 | Plus |
| Pcmt-RC | 998 | CG2152-RC | 776..856 | 606..686 | 405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5553271..5553676 | 605..200 | 2030 | 100 | Minus |
| 3R | 32079331 | 3R | 5553931..5554068 | 200..63 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 5552965..5553049 | 686..602 | 425 | 100 | Minus |
| 3R | 32079331 | 3R | 5554129..5554184 | 63..8 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:35 has no hits.
UFO04267.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:12 Download gff for
UFO04267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcmt-RA | 121..811 | 1..693 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:05 Download gff for
UFO04267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcmt-RA | 126..816 | 1..693 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:07 Download gff for
UFO04267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcmt-RA | 126..816 | 1..693 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:07 Download gff for
UFO04267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5552953..5553045 | 606..700 | 91 | <- | Minus |
| 3R | 5553271..5553675 | 201..605 | 100 | <- | Minus |
| 3R | 5553931..5554067 | 64..200 | 100 | <- | Minus |
| 3R | 5554129..5554187 | 1..63 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:05 Download gff for
UFO04267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1378675..1378767 | 606..700 | 91 | <- | Minus |
| arm_3R | 1378993..1379397 | 201..605 | 100 | <- | Minus |
| arm_3R | 1379653..1379789 | 64..200 | 100 | <- | Minus |
| arm_3R | 1379851..1379909 | 1..63 | 93 | | Minus |
