UFO04268.5prime Sequence
1154 bp (1028 high quality bases) assembled on 2009-02-18
> UFO04268.5prime
CAGTCGACATGTCTTCAACCCCAGCAGCGGGCAGTGCCGCCGAGGTGGCC
ACCTCCAGTGCCACCTCAAATGCGCCCAGTGCACCCAGCACAACGGCCAG
CAACGTGAGCAATACCAGCCAGCCGACGACTGCCGGAACTCCGCAGGCAC
GTGGCGGCAGGGGCAGCAACGCCAACGGTGGTGCCTCCGGGAGCAATGCC
GGTGGCGGAGATGAGCCGCGAAAGGAAGCCAAAACAACGCCCAGGATATC
CAGGGCGCTGGGCACCTCGGCCAAGCGCATACAGAAGGAGCTGGCTGAGA
TCACACTGGATCCACCGCCCAACTGCAGTGCCGGGCCCAAGGGCGACAAC
CTGTACGAGTGGGTATCCACCATACTGGGACCACCCGGATCCGTCTACGA
GGGCGGCGTCTTCTTCCTCGACATACACTTCTCGCCGGAGTATCCCTTCA
AGCCACCCAAAGTCACGTTCCGCACGCGCATCTATCACTGCAACATCAAC
AGCCAGGGCGTCATTTGCCTGGACATACTCAAGGACAACTGGTCGCCGGC
GCTGACCATATCAAAGGTCTTGCTGTCAATTTGCTCCCTGCTCACAGACT
GTAATCCAGCCGATCCGCTGGTGGGCAGCATTGCCACGCAATATTTGCAG
AATCGTGAGGAGCACGATCGAATTGCGCGTCTCTGGACAAAAAGGTACGC
AACAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGCGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCGACATGG
AAGCCATCACAAACGGCATGATGAACTGATCGCAGCGCATCAGCACCTTG
TCGGCTGCGTATAAATATTGCCCATGGTGAAACGGGGGAAGAAGTGTCCC
ATAATTGGCTCACGTTTAATCAACCTGGTACTCACCAGGAATGGCCTGAA
ACAA
UFO04268.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc2-RD | 1625 | CG6720-RD | 372..1067 | 9..704 | 3465 | 99.9 | Plus |
| Ubc2-RC | 2111 | CG6720-RC | 305..1000 | 9..704 | 3465 | 99.9 | Plus |
| Ubc2-RB | 1349 | CG6720-RB | 96..791 | 9..704 | 3465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10766391..10766991 | 609..9 | 2990 | 99.8 | Minus |
| 2L | 23513712 | 2L | 1334347..1334718 | 282..653 | 495 | 75.5 | Plus |
| 2L | 23513712 | 2L | 10766189..10766278 | 696..607 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:12:49 has no hits.
UFO04268.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:11 Download gff for
UFO04268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcD2-RB | 96..797 | 9..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:31 Download gff for
UFO04268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcD2-RA | 305..1006 | 9..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:37 Download gff for
UFO04268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc2-RB | 96..797 | 9..710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:37 Download gff for
UFO04268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10766189..10766275 | 610..696 | 100 | <- | Minus |
| 2L | 10766391..10766991 | 9..609 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:31 Download gff for
UFO04268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10766189..10766275 | 610..696 | 100 | <- | Minus |
| arm_2L | 10766391..10766991 | 9..609 | 99 | | Minus |
