UFO04269.5prime Sequence
1120 bp (1007 high quality bases) assembled on 2009-02-18
> UFO04269.5prime
CAGTCGACATGTCCGAGACCCTGCAATTGCGCGGTACCCTCATTGGCCAC
AATGGATGGGTCACCCAGATCGCCACCAACCCCAAGGATCCCGACACCAT
AATTTCGGCCTCCCGTGACAAGACCCTGATCGTGTGGAAGCTGACCCGCG
ACGAGGACACCAACTACGGCTACCCCCAGAAGCGTCTCTACGGACACTCG
CACTTCATCAGCGACGTGGTGCTCTCCTCCGATGGCAACTACGCCCTGTC
CGGATCCTGGGATCAGACCCTTCGCCTGTGGGATTTGGCCGCCGGCAAGA
CCACCCGTCGCTTCGAGGGACACACTAAGGACGTTTTGTCGGTTGCCTTC
TCGGCCGATAACCGTCAGATCGTGTCCGGCTCTCGGGACAAGACCATCAA
GCTGTGGAACACCCTGGCTGAGTGCAAGTTCACCATCCAGGAGGATGGCC
ACACCGACTGGGTGTCGTGCGTGCGCTTCTCGCCCAACCACTCCAACCCG
ATCATCGTGTCCTGCGGCTGGGATCGCACCGTCAAGGTCTGGAACTTGGC
TAACTGCAAGTTGAAGAACAACCACCACGGCCACAACGGCTACCTGAACA
CGGTGACCGTCTCGCCCGATGGCTCCCTGTGCACCTCAGGTGGCAAGGAC
TCCAAGGCCCTGCTGTGGGACCTCAATGACGGCAAGAACCTGTACACTCT
GGAGCACAACGACATCATCAACGCCCTGTGCTTCTCGCCCAACCGCTACT
GGCTGTGCGTGGCCTACGGACCCTCGATCAAGATCTGGGATCTGGCATGC
AAGAAGACCGTTGAGGAGCTGCGCCCCGAGGTCGTTTCGCCCACGTCGAA
GCCGATCAGCCCCAGTGCCTGTCCCTGGGCCTGTCCACCGACGGCCAGAC
TCTGTTCGCCGGCTACTCCGACACACCATCGCGTCTGGCAGTGTCTGTTT
CGGCTCCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
GTGTCATATCATAATCATAATCATATCATATCACAACTAGGCTTAGGAGA
TTCTGGTCTTGACTATGCCTGATTCTCACATAAACGCCGCGCACGAACGT
CTGAACAATTCGAATGGAGT
UFO04269.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rack1-RC | 1388 | CG7111-RC | 78..1029 | 9..956 | 4615 | 99.4 | Plus |
| Rack1-RD | 1175 | CG7111-RD | 147..1098 | 9..956 | 4615 | 99.4 | Plus |
| Rack1-RA | 1106 | CG7111-RA | 78..1029 | 9..956 | 4615 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7825706..7826338 | 956..328 | 2920 | 98.9 | Minus |
| 2L | 23513712 | 2L | 7826769..7826982 | 330..117 | 1070 | 100 | Minus |
| 2L | 23513712 | 2L | 7827061..7827169 | 117..9 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:19 has no hits.
UFO04269.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:10 Download gff for
UFO04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 76..1046 | 1..969 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:14 Download gff for
UFO04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 70..1040 | 1..969 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:22 Download gff for
UFO04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 70..1040 | 1..969 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:22 Download gff for
UFO04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7825706..7826336 | 330..956 | 99 | <- | Minus |
| 2L | 7826770..7826981 | 118..329 | 100 | <- | Minus |
| 2L | 7827061..7827175 | 1..117 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:14 Download gff for
UFO04269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7825706..7826336 | 330..956 | 99 | <- | Minus |
| arm_2L | 7826770..7826981 | 118..329 | 100 | <- | Minus |
| arm_2L | 7827061..7827175 | 1..117 | 96 | | Minus |
