UFO04272.5prime Sequence
1106 bp (1049 high quality bases) assembled on 2009-02-18
> UFO04272.5prime
CAGTCGACATGCTGAAAATAACAAAGATCTGCTTGGCCAGCTCCGCCACA
AGTACAGCTCAGCGAAGCATTGCTCTTACTGCCCCCCGTGCCATTGATCA
GAAGTGGCGTGCAGCCAAGGGATTGCCGGAAAACCCAAATGCCTTTGGCC
CACTCACCAACCTGCCCGACTACACGTACTTAGATGGTAGGCCCACGCCG
CTAGGTGCCAACCAGAAGAGGCGCCTGATTAAGCAGCAGGAGATCGCCAC
CAGGATCGTGGAGCTAAGTGGGGAGCTAGAGTTCGCCAAGCAGCGACATG
AACGCCTTAAGGCAAATGCCGAGTCCGAGAAACAGCGCCTCATCCGCAGC
AAACTGAAGCCCAAGGGCCACTTCCTGCTCAAGAAAGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCG
TAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAATCGTCG
TGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAACGG
TGTAACAAGGGTGACACTATCCCATATCACCAGCTCACCGTCTTTTCATT
GCATACGAATTCCGGAAGAGACCATTCCATTCAGGCCGGGCCAGAATGTG
TGATTA
UFO04272.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL52-RA | 558 | CG1577-RA | 98..475 | 9..386 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7673804..7673983 | 386..207 | 900 | 100 | Minus |
| 2R | 25286936 | 2R | 7674043..7674195 | 207..55 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 7674255..7674303 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:25:19 has no hits.
UFO04272.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:57:19 Download gff for
UFO04272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL52-RA | 101..482 | 9..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:43 Download gff for
UFO04272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL52-RA | 98..479 | 9..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:04 Download gff for
UFO04272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL52-RA | 98..479 | 9..392 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:04 Download gff for
UFO04272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7673804..7673983 | 207..386 | 100 | <- | Minus |
| 2R | 7674044..7674192 | 58..206 | 100 | <- | Minus |
| 2R | 7674255..7674303 | 9..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:43 Download gff for
UFO04272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3561309..3561488 | 207..386 | 100 | <- | Minus |
| arm_2R | 3561549..3561697 | 58..206 | 100 | <- | Minus |
| arm_2R | 3561760..3561808 | 9..57 | 100 | | Minus |
