UFO04274.5prime Sequence
1128 bp (1015 high quality bases) assembled on 2009-02-18
> UFO04274.5prime
CAGTCGACATGGCACAGAAACTGATCCTCGTCCTGAGCGCCCTGGTGGCG
GTGTCCTCCGCCGTTGTGGTCCCTGGTCCCGGACTGGCACTGCCCGCCTA
TCCATCGTACCCGGCGCTGGCCAAGGTGGCTGCTCCTCTGGTGGCCAAGG
TGGCGGGTCCGGAGCCATACGATCCCAATCCCCAATACACCTTCAGCTAC
GATGTTCATGATGGCTCCACTGGTGACGTGAAGAGCCAGCAGGAGACCCG
CAGCGGAGATGTGGTGCAGGGCGCCTATTCACTGATTGAGGCCGACGGAA
CCCGCCGCATTGTGGAGTACACCGCCGATCCCGTGCACGGATTCAACGCA
GTGGTGCGCCGCGAGGGAGCTGTGGTGAAGGCTGTGGCTCCGGTGGCCAA
GGTTCTGGCCCCGGCTCCGCTGCTCCATGCCTCTCCTCTGGTGGCCAAGG
TGCCCGCCTATGGTCCGGCTCTGGCGCCCGCTTACCCGGCTCTGGCCCAC
GGATACGGACCGGCTCTGGCTCCCGCCTATGGACCTGCTCTGCCCAAGCT
GGCCCTGCCCGCCCTCTCGCCCCTGGGCTACCACGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAT
ATTTGCCCATGTGAAACGGGGGCGAGAGTGTCATATGCCACGTTTAAATC
AAACTGTGAACTCACCCAAGGATGCTGAACGAAAACATATTTCTCATAAC
CCTTTAAGGATAGCAGTTCACGTAACCCGCCCATCTTGCCAATATTGTGT
AGACTGCGAATCGCTGGATCACTCGAGC
UFO04274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr64Aa-RA | 1014 | CG15006-RA | 87..662 | 9..584 | 2880 | 100 | Plus |
| Ccp84Ag-RA | 1097 | CG2342-RA | 152..349 | 168..365 | 315 | 77.9 | Plus |
| Cpr92A-RA | 1120 | CG6240-RA | 282..496 | 145..359 | 205 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4208190..4208564 | 584..210 | 1875 | 100 | Minus |
| 3L | 28110227 | 3L | 4208891..4209092 | 210..9 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 6687094..6687291 | 168..365 | 315 | 77.3 | Plus |
| 3R | 32079331 | 3R | 19598126..19598340 | 359..145 | 205 | 73 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:25:43 has no hits.
UFO04274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:07 Download gff for
UFO04274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr64Aa-RA | 86..674 | 1..589 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:57 Download gff for
UFO04274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr64Aa-RA | 78..666 | 1..589 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:15 Download gff for
UFO04274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr64Aa-RA | 78..666 | 1..589 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:15 Download gff for
UFO04274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4208892..4209096 | 1..209 | 98 | | Minus |
| 3L | 4208186..4208564 | 210..589 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:57 Download gff for
UFO04274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4208186..4208564 | 210..589 | 99 | <- | Minus |
| arm_3L | 4208892..4209096 | 1..209 | 98 | | Minus |
