UFO04275.5prime Sequence
1119 bp (1027 high quality bases) assembled on 2009-02-18
> UFO04275.5prime
CAGTCGACATGGCCGAGTATAGACCATCCACTTCGTGGCCCCATCGGATG
ATGAGCTTCCAGTGCCGGCAGGCGGACCTGAATCGCCTGGTGATGAACTA
TCTGGTTACAGAGGGATATCAAGAGGCCGCCAAGCGTTTCATGACCGAGG
CGTCTGTGAAGCCGGGTCCACACATGGACACCATCGGGGATCGTTTAAGG
ATTCAGGATGCCGTGCGTGTGGGTCAGGTCAAGTACGCCATGGACCTGGC
CACACGGATCTATCCACGGCTCTTCGAGACCGACAACTATGTATTTTTTC
ACATGCAACAGTTGCGCCTGATCGAGATGATCAGGGATCAGAAGATGGAG
AAGGCCTTGAAGTTTGCCCAGAGCAAGGCAGCGGGCTTTTCCAAGGTCGA
TCCAAGTCACTACCACGAAGTGGAGCGGACCATGGGTCTGCTGGCCTTCG
ATCGGCCGGAATACAGTCCCTACGGGGAGCTGATGTACTACTCATATCGC
CAAAAGGTGGCCGGTGAAATGAATGCAGCCATGTTACGCTGCCACGAGGA
TGAGAGTAAGAGCAAAGAGGAGCCCATGGAGCCAAGAATGATGTTCCTCA
TCAAGCTAATCCTTTGGGCCCAGGCCAAGCTGGATCGCGAGGGATTCACC
GACTACCACAAGCTTGATCTTGGCCACGCGGATTTCGAGGAAGAGTTCCG
CCGGAGTTTCCAGGGTTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGTCATTACTGATCTATCACAGAGTCCAAGCGAGCTCGATATCAAAT
TACGCCCGCCTGCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCGACATGCAAGCATCACAACGCATGATGACTGAATCGCCAGCGCATCAG
CACCTTGTCGCCTTGGTATATATTTGCCATGTGAACGGGGCCGAGAGTTG
TTCATATGGCCAGTTATCA
UFO04275.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18467-RA | 1462 | CG18467-RA | 549..1259 | 9..719 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17441671..17442280 | 110..719 | 3050 | 100 | Plus |
| 2R | 25286936 | 2R | 17441515..17441617 | 9..111 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:07 has no hits.
UFO04275.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:06 Download gff for
UFO04275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18467-RA | 240..956 | 6..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:57 Download gff for
UFO04275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18467-RA | 547..1263 | 6..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:56 Download gff for
UFO04275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18467-RA | 547..1263 | 6..724 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:56 Download gff for
UFO04275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17441513..17441617 | 6..111 | 99 | -> | Plus |
| 2R | 17441673..17442284 | 112..724 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:57 Download gff for
UFO04275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13329018..13329122 | 6..111 | 99 | -> | Plus |
| arm_2R | 13329178..13329789 | 112..724 | 99 | == | Plus |
