UFO04276.5prime Sequence
1121 bp (1008 high quality bases) assembled on 2009-02-18
> UFO04276.5prime
CAGTCGACATGGCTGCCAACAAATTGTGCTGCACTTTGGCTATTGGCGCT
CTTTTGTGTCTGGGATTCGCAGCCCTCATTCAAGCTCAGGATAAGCCGGT
GACTGATGTGTGCCTGGGATGCATCTGCGAGGCCATCAGTGGATGCAACC
AGACACGTTACTGCGGCGGCGGAGTCTGCGGCCTGTTTCGCATCACCTGG
GCATATTGGGCCGACGGCGGCAAGCTGACCTTGGGCAACGAGAGTCCCCA
GTCGGAGGATGCGTATGCCAATTGCGTGAACGATCCCTACTGCGCGGCCA
ACACGATCCAGAATTACATGACCAAGTTCGGCCAGGACTGCAATGGAGAC
AACGCCATCGATTGCTACGACTTTGCTGCCATCCACAAGCTGGGCGGCTA
TGGATGCAAGGGCGAGCTGAGCTACCAGTACCAGACGCAGCTGACCAACT
GCCTTAATTCGTTCCAGCAGATCGACGTGCGCTCTAGCATAGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAACGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAATCAAACTGGTGAACTCACCAGGGATTGCTGAGACGAAA
ACATATCTCATAACCCTTTAGGAAATAGCCAGTTTCACGTAACCCGCCAC
ATCTTGCGAAATAATGTGTAGAACTGCGAAATCGTCTGTATTCACTCCAG
AGCGATGAAAACGTTCAGTGCTCATGAAAACGGGTACAGGGAACTTTCAT
TACCGCCTACCGTCTCTAATG
UFO04276.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6426-RA | 713 | CG6426-RA | 120..602 | 9..491 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16871510..16871740 | 261..491 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 16871269..16871440 | 90..261 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 16869521..16869602 | 9..90 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:16 has no hits.
UFO04276.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:05 Download gff for
UFO04276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6426-RA | 130..615 | 9..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:12 Download gff for
UFO04276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6426-RA | 120..605 | 9..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:21 Download gff for
UFO04276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6426-RA | 120..605 | 9..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:21 Download gff for
UFO04276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16869521..16869602 | 9..90 | 100 | -> | Plus |
| 2R | 16871270..16871440 | 91..261 | 100 | -> | Plus |
| 2R | 16871511..16871740 | 262..491 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:12 Download gff for
UFO04276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12757026..12757107 | 9..90 | 100 | -> | Plus |
| arm_2R | 12758775..12758945 | 91..261 | 100 | -> | Plus |
| arm_2R | 12759016..12759245 | 262..491 | 100 | == | Plus |
