UFO04277.5prime Sequence
1105 bp (1018 high quality bases) assembled on 2009-02-18
> UFO04277.5prime
CAGTCGACATGGGTATTGATATCAACCACAAGTACGATCGCAAGGTTCGC
AGAACCGAGCCCAAATCCCAGGATGTGTACCTGCGCCTGCTGGTCAAGCT
GTACCGCTTCCTTCAGCGCCGCACCAACAAGAAGTTCAACCGCATCATCC
TGAAGCGTTTGTTCATGAGCAAGATCAACAGGCCGCCGCTATCGCTTCAG
CGCATCGCTCGCTTCTTCAAGGCCGCCAACCAGCCGGAGTCTACCATCGT
GGTCGTCGGCACCGTCACCGACGATGCCCGCCTCCTGGTGGTGCCCAAGC
TCACCGTGTGCGCCCTGCACGTCACGCAGACCGCCAGGGAGCGCATCCTG
AAGGCCGGCGGTGAGGTCCTGACCTTCGATCAACTGGCTCTCCGATCGCC
CACCGGCAAGAACACGCTGCTGCTGCAGGGCAGGCGTACCGCCCGCACCG
CCTGCAAGCACTTCGGCAAGGCTCCCGGTGTGCCCCACTCGCACACCCGC
CCCTATGTCCGCTCTAAGGGACGCAAGTTCGAGCGTGCTCGTGGTCGTCG
CTCCAGCTGCGGCTACAAGAAGGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGACCTGATC
GCAGCGGCATCAGCACCTTGTCGCTTGCGTATATATTTGCCCATGGTGAA
ACGGGGCGAGAGTGTCCATATGCCACGTTTAATCAAAACTGGTGAAACTC
ACCAGGATGCTGAACGAAAACAATTCTCATACCTTTAGGAATAGCAAGTT
CACGTACCGCCCCATCTGGCGAATATTGTGTAGAACTGCCGATGCTTGGA
ATTAC
UFO04277.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL18-RB | 756 | CG8615-RB | 92..655 | 9..572 | 2820 | 100 | Plus |
| RpL18-RC | 694 | CG8615-RC | 30..593 | 9..572 | 2820 | 100 | Plus |
| RpL18-RA | 724 | CG8615-RA | 60..623 | 9..572 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7240304..7240779 | 572..97 | 2380 | 100 | Minus |
| 3L | 28110227 | 3L | 7240855..7240942 | 98..11 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:04:18 has no hits.
UFO04277.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:04 Download gff for
UFO04277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18-RA | 50..630 | 1..583 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:11 Download gff for
UFO04277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18-RA | 52..632 | 1..583 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:34 Download gff for
UFO04277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18-RA | 52..632 | 1..583 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:34 Download gff for
UFO04277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7240295..7240777 | 99..583 | 98 | <- | Minus |
| 3L | 7240855..7240950 | 1..98 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:11 Download gff for
UFO04277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7233395..7233877 | 99..583 | 98 | <- | Minus |
| arm_3L | 7233955..7234050 | 1..98 | 94 | | Minus |
