UFO04278.5prime Sequence
1120 bp (1020 high quality bases) assembled on 2009-02-18
> UFO04278.5prime
CAGTCGACATGTGGTCCTCTAAGACTATTTTGGTTTTCCTAGCAGCATTT
ACTTTGGTCCAGGGTAGCATGCGGTTTCACTTCACCTTGGACTTTCACGT
ACAGCAGCCGCCGAATGCATCCGACACCATCGACAAGACCATTATTGTGG
AGAACGATCGGATATCTATGGTGGACAACGAAGGAGCGACTACTAAGGCT
CCGATGACCCAGTGGACAGATCAGGATCAGTATAATCAGGACGCATTGCT
GAAGGTGACCGATACGCGCAGATCGGTGCAACAGCTGAATACGGAGCTCT
CACCCCTGGTTGGCAGGAGCACCGATTTGGCCAGAAGGATTAAGCAGAGT
ATGCGATACGTCAACGAGGTGGATGCTAATCTGGACGATTTGAGCAACTT
TGGGCAGCTGGTGGAGCTGCTCAAGAAATTCGTAATCCTAGTCGATAACC
TAAGGGATCCAAACAATCTCGGAGGCATTCGAAGCCTGGAGTACGTACTC
CTGAAGTTGGCTCTAGAGAAGTACGACCTTCTGAACAAGCGACAGGAGAT
CGGTGAATACTTGGAAAGGGCGGAGAGTGCCTGGCGAAGATACCAAAACA
CACAGGTGGTTGTTCTGGATAACTCCACCGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCGACATGGAGCCATCACAAACGGCATGATGAC
CTGATCGCAGCGGCATCAGCACTTGTCGCTTGCGTATAATATTTGCCATG
TGAAACGGGGGCGAGAGTGTCATATGCACGTTAATCAACTGTGAACTCAC
CAGGATGCTGAAACGAAAACTATTCCATAACCTTTAGGAATGCAGTTTCA
CGTTACCGCCCATCTGGCAA
UFO04278.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9837-RF | 2072 | CG9837-RF | 30..650 | 9..629 | 3105 | 100 | Plus |
| CG9837-RE | 802 | CG9837-RE | 30..650 | 9..629 | 3105 | 100 | Plus |
| CG9837-RD | 1488 | CG9837-RD | 568..1137 | 60..629 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8809101..8809669 | 629..61 | 2845 | 100 | Minus |
| 3R | 32079331 | 3R | 8809728..8809782 | 63..9 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:01 has no hits.
UFO04278.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:03 Download gff for
UFO04278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9837-RA | 22..650 | 1..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:16 Download gff for
UFO04278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9837-RE | 22..650 | 1..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:47 Download gff for
UFO04278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9837-RE | 22..650 | 1..629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:47 Download gff for
UFO04278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8809101..8809662 | 68..629 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:16 Download gff for
UFO04278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4634823..4635384 | 68..629 | 100 | <- | Minus |
