UFO04279.5prime Sequence
1137 bp (1017 high quality bases) assembled on 2009-02-18
> UFO04279.5prime
CAGTCGACATGGCTAAATTATTGCAACGCGTAGAAATTACGTTACGCAGC
TTTTACATTTTTAACTCGACTTTTGGCCAAGTTGAAGGCGAGGAACACAA
GAAGGTTTTGTTTTACCATCCAAATGACATTGAATTAAATACGAAAATCA
AAGATGTGGGACTAAGTGAGGCCATCATAAGGTTCACTGGAACTTTTACA
TCTGAAGATGATTGCCAGGCCTTGCATACCCAGAAAACCACACAACTCTT
CTACCAACCCGAGCCAGGGTATTGGTTAGTACTGGTCCTGAATGTTCCCA
AGGAGGTGCGCTTAAAGGAGGGCGTGGAGGTGGCCGATTATCGGGGTGCC
GAGATCTCCGACAGGATTTATAGAGCAATACTTAGACAATGCTATCAAAT
GTTTCGCTTTCAAAACGGATGTTTCTCCTCCTGCGGAAGTGAAGAACCTA
ATCCGGATAAGCGTAGGGAACTGCTCTGCCAGAAGCTACTCCAGTTCTAT
GATCAGCATCTGACCAACCTGAGGGATCCCGCGCAATGTGATATCATCGA
TATGCTGCATTCCATTCAGTATCTGCCATTGGATAAAACGCTCTTCTTGC
GGGCCCAAAACTTTGGCACCCTGTGCGAGACCTTCCCCGACATCAAGGAG
AGCATAATGCTCTACCAGGAGCAGGTCCTTTGTGGCGGAAAACTTAGCCC
GGAGGATCTGCACTGCGTGCACTCGTATGTCGTGCAACACGTGCTGAAAG
TCGAGGCCAGCAGTTCCACCATTGCAGTTTCTCCTTCACTAAAGCGAAGC
ATAAGTGAATGCCAGGTGGGCGGATTCGTAAGAAGTCGTCAGATGGTCGC
AGAGATGAACATGACGCTGTGAATGAGGAAGATCATCCAATGAAGGTCTA
TGTGACACTGGACAGGAGGCCAAACCCTACTACTTGCTCATCTACCGGCG
CTTTGCACATACTCTGGTGTCTGTTTCTGAATGCTGACCAGGTTGCGCCG
AAACAAGATCTCTACGACGATCTCATGCCTACATGGCTCCCCACTGACTT
CGTTGGCCGGGACATATCCAGCGAGTGACAAGAGGGGCGCGGTGGGTGTC
GTCAGTCCAGGACACCTCCAGCGGGACGGGAAACGGG
UFO04279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccz1-RB | 1531 | CG14980-RB | 59..1178 | 9..1126 | 5235 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3898004..3898798 | 983..190 | 3740 | 98.9 | Minus |
| 3L | 28110227 | 3L | 3898862..3898961 | 190..91 | 500 | 100 | Minus |
| 3L | 28110227 | 3L | 3899014..3899098 | 93..9 | 425 | 100 | Minus |
| 3L | 28110227 | 3L | 3897845..3897941 | 1076..983 | 335 | 96.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:02:46 has no hits.
UFO04279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:02 Download gff for
UFO04279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14980-RB | 56..1190 | 6..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:17 Download gff for
UFO04279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccz1-RB | 56..1190 | 6..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:55 Download gff for
UFO04279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccz1-RB | 56..1190 | 6..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:55 Download gff for
UFO04279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3898004..3898797 | 191..983 | 99 | <- | Minus |
| 3L | 3898862..3898959 | 93..190 | 100 | <- | Minus |
| 3L | 3899015..3899101 | 6..92 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:17 Download gff for
UFO04279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3898004..3898797 | 191..983 | 99 | <- | Minus |
| arm_3L | 3898862..3898959 | 93..190 | 100 | <- | Minus |
| arm_3L | 3899015..3899101 | 6..92 | 98 | | Minus |
