UFO04281.5prime Sequence
1122 bp (1014 high quality bases) assembled on 2009-02-18
> UFO04281.5prime
CAGTCGACATGTCAGTGTCCATTACAAAAAAGTTTTACAAGTTGGATATA
AATCGAACGGAATGGGAGATCCCGGATATATACCAGGATCTGCAGCCCGT
GGGATCGGGAGCTTACGGACAGGTGTCAAAGGCAGTTGTTCGTGGCACCA
ATATGCATGTGGCCATTAAAAAGCTTGCCAGGCCTTTTCAATCAGCTGTC
CATGCAAAGAGGACGTACCGGGAGCTTCGACTTTTAAAGCATATGGATCA
TGAGAACGTAATCGGTCTGCTGGACATATTCCATCCACATCCCGCTAATG
GATCGCTGGAGAACTTCCAACAGGTGTACTTGGTTACCCACTTGATGGAC
GCAGATCTGAACAACATCATACGGATGCAGCACTTGTCCGACGACCACGT
CCAGTTTTTAGTCTACCAGATACTCCGTGGCTTGAAGTATATCCACAGCG
CCGGAGTGATCCACCGTGATCTTAAGCCCTCAAACATTGCCGTCAACGAG
GATTGCGAGCTGCGCATTCTAGACTTCGGGCTGGCCCGCCCAACGGAGAA
CGAGATGACAGGCTATGTGGCCACGCGTTGGTACCGGGCACCTGAAATAA
TGCTCAATTGGATGCACTACGACCAAACAGTGGACATCTGGTCGGTGGGC
TGCATCATGGCCGAACTAATTACCAGACGAACCCTCTTCCCAGGCACCGA
CCATATTCACCAGCTAAACCTGATTATGGAGATGTTGGGCACGCCACCCG
CCGAATTTTTGAAGAAGATCTCATCGGAAAGTGCACGTTCCTACATCCAG
TCACTTCCGCCTATGAAGGGACGAAGTTTTAAAATGTTTTTAAGACGCCA
ATCCGCTGGCCATTGATTTGCTGGAAAGATGTTGGAGCTAGATGCCGAAA
GCGGATCACAGCCGAGAGCTCTTTCCCATCCATATCTGGAGAAGTATGCG
GAGCCCAGCGTCGAGCAGACCTCACCACCATACGATCACAGCTCAGGAAT
TGATTTGCCCGTAAACAATGGATGATTGATCTACAGGAGGTCACCACTTT
AGCCCCACATCGATGCTCAGTCTAAGGATGTAAAGGCAAGCTTCCGACCA
TCGTGGCGCGGCCCAGTAAGGG
UFO04281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p38a-RC | 1474 | CG5475-RC | 187..1285 | 8..1085 | 4945 | 97.8 | Plus |
| p38a-RB | 1634 | CG5475-RB | 347..1445 | 8..1085 | 4945 | 97.8 | Plus |
| p38a-RA | 1450 | CG5475-RA | 163..1261 | 8..1085 | 4945 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24150712..24151703 | 993..8 | 4680 | 99.3 | Minus |
| 2L | 23513712 | 2L | 13781024..13781734 | 36..746 | 1215 | 78.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:48:18 has no hits.
UFO04281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:00 Download gff for
UFO04281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpk2-RB | 393..1501 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:37 Download gff for
UFO04281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpk2-RA | 157..1265 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:02 Download gff for
UFO04281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p38a-RA | 157..1265 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:02 Download gff for
UFO04281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24150601..24151709 | 1..1089 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:37 Download gff for
UFO04281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19976323..19977431 | 1..1089 | 97 | | Minus |
