UFO04282.5prime Sequence
1105 bp (1008 high quality bases) assembled on 2009-02-18
> UFO04282.5prime
CAGTCGACATGGGCATTGCCTTGATGTTCCTGCTGGCCCTGTACCAGATG
CAGTCGGCCATCCACAGCGAGATCATCGATACGCCCAACTATGCGGGCAA
CTCGTTGCAGGACGCTGACTCCGAGGTGAGTCCACCGCAGGACAATGACC
TGGTAGATGCACTGCTCGGCAACGATCAGACCGAGAGGGCGGAGCTGGAG
TTCCGGCACCCCATCTCTGTGATTGGCATCGACTACTCGAAGAACGCCGT
GGTGCTGCACTTCCAGAAACACGGCCGGAAACCGCGCTACAAGTACGATC
CCGAGCTGGAGGCCAAGCGAAGGTCCGTGCAGGACAACTTCATGCACTTC
GGCAAGAGGCAGGCGGAGCAGCTGCCACCGGAGGGCAGCTATGCTGAATC
CGATGAACTGGAGGGCATGGCCAAGCGAGCAGCTATGGATCGGTATGGCA
GAGATCCCAAGCAGGACTTCATGCGGTTTGGTCGGGATCCGAAACAGGAC
TTCATGAGGTTTGGCAGGGATCCAAAGCAGGACTTCATGAGATTCGGTCG
GGATCCCAAGCAGGATTTCATGAGATTCGGTCGAGATCCCAAGCAGGATT
TCATGAGGTTTGGACGCACTCCGGCTGAGGATTTCATGAGGTTCGGACGC
ACTCCGGCGGAGGACTTCATGAGGTTCGGACGCTCCGACAATTTCATGCG
CTTCGGACGCAGTCCCCACGAGGAGCTTCGCAGTCCCAAACAGGATTTCA
TGCGATTCGGTCGCCCGGACAACTTCATGCGCTTCGGGCGTTCCGCTCCG
CAGGATTTTGTGCGCTCCGGGAAGATGGACTCAAACTTCATTCGATTCGG
TAAGAGCTTGAAGCCCGGCGGCTCCCGAGTCCAGCCAGTCAAGTCCAATC
AAGGCAACCCAGGCGACGCAGTCCAGTGGACAGGCCATGACGGAGCTGTT
CAGAAACAGGAGCTGCAGATCAGCAGTGAGACGCGCACAGCGACCACCAC
GCAGGATGGGAGTGTGACAGACAGTTCTTCGGCAAGCCAGCTTCTAGACA
TTCGTTTGGCGCGCCGGGTAGGTAATGCCTAATCCTAATCTAATCTAATC
TAATC
UFO04282.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FMRFa-RA | 1427 | CG2346-RA | 109..1146 | 9..1033 | 4830 | 98.6 | Plus |
| FMRFa-RA | 1427 | CG2346-RA | 553..750 | 486..683 | 570 | 85.9 | Plus |
| FMRFa-RA | 1427 | CG2346-RA | 586..783 | 453..650 | 570 | 85.9 | Plus |
| FMRFa-RA | 1427 | CG2346-RA | 608..815 | 442..655 | 320 | 77.6 | Plus |
| FMRFa-RA | 1427 | CG2346-RA | 542..755 | 508..715 | 320 | 77.6 | Plus |
| FMRFa-RA | 1427 | CG2346-RA | 553..614 | 552..613 | 190 | 87.1 | Plus |
| FMRFa-RA | 1427 | CG2346-RA | 652..713 | 453..514 | 190 | 87.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9909139..9910155 | 9..1016 | 4585 | 98.5 | Plus |
| 2R | 25286936 | 2R | 9909583..9909780 | 486..683 | 570 | 85.9 | Plus |
| 2R | 25286936 | 2R | 9909616..9909813 | 453..650 | 570 | 85.9 | Plus |
| 2R | 25286936 | 2R | 9909572..9909747 | 508..683 | 310 | 78.4 | Plus |
| 2R | 25286936 | 2R | 9909638..9909813 | 442..617 | 310 | 78.4 | Plus |
| 2R | 25286936 | 2R | 9909583..9909644 | 552..613 | 190 | 87.1 | Plus |
| 2R | 25286936 | 2R | 9909682..9909743 | 453..514 | 190 | 87.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:02:49 has no hits.
UFO04282.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:09 Download gff for
UFO04282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmrf-RA | 107..1156 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:20 Download gff for
UFO04282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FMRFa-RA | 104..1153 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:57 Download gff for
UFO04282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FMRFa-RA | 104..1153 | 1..1040 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:57 Download gff for
UFO04282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9909139..9910183 | 9..1040 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:20 Download gff for
UFO04282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5796644..5797688 | 9..1040 | 98 | | Plus |
