UFO04283.5prime Sequence
1099 bp (1024 high quality bases) assembled on 2009-02-18
> UFO04283.5prime
CAGTCGACATGCAGTCCGTGAAAGTGATCTTTGTTCTGTCTGTGACCCTG
GCGGTTGCCTTTGCTAACCCGAGGTTGCCGCCCGGTGCCCCGAAGCCGCT
GGATGGAGATGACTTATCCAAGGCTAAGGAGCTCTTGGACACAACGCTCG
CCAAACTTGCCACAGGAGATGGTCCCAATTATCAGGTAGTGAATGTGATC
TCGGCATCTAGCCAACTGGTGGCTGGGTCGCTCTACAAATTCGAGGTGAA
GCTGTCCAACGGAGCCGAGACCAAGGAGTGCAACGTAAAGATCTGGGACA
GGCCATGGCTGCATGAGCAGGGGGAGGCCACCAATGTGAAGGTCCAGTGC
AAGGATGAAGATGTGCTCGAGAAGACCTGGGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT
TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTT
TAAATCAAAACTGGTGAAACTCACCCAGGGATTGGGCTGAGACGAAAAAC
ATATTCTCAATAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTACACG
CCACATCTTGCGATATATGTGTAGAAACTGCCGGGAAATCGTCGTGTATT
CACTCAGAGCGATGAAACGTTTCAGTTTGCTCATGGAAACGGTGTAACAG
GGTGACACTATCCCATATCACAGCTCACGTCTTTCATTGCATACGAATTC
GATGAGCATCATCAGGCGGCCAAGAATGTGTGAATAAAGGCCGGGATTA
UFO04283.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31313-RB | 470 | CG31313-RB | 32..403 | 9..380 | 1860 | 100 | Plus |
| CG31313-RA | 782 | CG31313-RA | 32..403 | 9..380 | 1860 | 100 | Plus |
| CG31313-RC | 645 | CG31313-RC | 32..414 | 9..380 | 1740 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14566811..14567006 | 380..185 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 14567164..14567280 | 185..69 | 585 | 100 | Minus |
| 3R | 32079331 | 3R | 14567339..14567398 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:25:46 has no hits.
UFO04283.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:09 Download gff for
UFO04283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31313-RA | 21..400 | 1..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:59 Download gff for
UFO04283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31313-RA | 24..403 | 1..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:17 Download gff for
UFO04283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31313-RA | 24..403 | 1..380 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:17 Download gff for
UFO04283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14566811..14567006 | 185..380 | 100 | <- | Minus |
| 3R | 14567165..14567280 | 69..184 | 100 | <- | Minus |
| 3R | 14567339..14567404 | 1..68 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:59 Download gff for
UFO04283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10392887..10393002 | 69..184 | 100 | <- | Minus |
| arm_3R | 10393061..10393126 | 1..68 | 94 | | Minus |
| arm_3R | 10392533..10392728 | 185..380 | 100 | <- | Minus |
