UFO04284.5prime Sequence
1051 bp (994 high quality bases) assembled on 2009-02-18
> UFO04284.5prime
CAGTCGACATGTTGCCGCTCCAATTCGTTTTGCTGGGCTGTCTGTTCATC
GCTCAGGGGATATGCCACACTCTGCCGGATCCCAAGCTAAGGGTGCCTCG
TGAAACTATCAACATTCCCACGCATCTCTTCAAGCCAGTGAGTCCGAAAT
CGAGCAACAAACCTATTTCTAATAGATCATCCTTAAATGGCGGAAACAGC
TCTGCCCTGGCCGAAGCAAATAACGATGTCGAGTTTCTAGAGAGATCTAG
CGGTGAAGTGGAGGAGGTGACCGACACCTACGAAGAGGAGGACGTTCCAC
TCCGACCTATCCCCTTCCAACCTCGACCGTTTTATCCTCAGATCCCTCCC
CGATCCAACGGTTTCCCCATTCGTCAACCCAACTATGACAATGCATTCCA
AACCGATTACAATGTGGGTCCCAGAGGCAGCGGCTTCGACAACAGACCTT
TTCCCAGTTCCCCGGATTTCCGTGGCAGAGGCATTCGACCAATTCCTGAC
TCCCCATTCCGCAATCAAAACTTAGGAACCTTTGTATCTCGACCGGTACC
TATGCCATCCAGTGGTTCCATTATCCCCCTTATCGCCGGTGGTTCCAGTA
TTCCGACTGGTAGAAGTGGTCCCCTTGGTTCCGGGGGCTCTTCTAACAAC
TTTTACCGGAGCGAATCCTATAGCTACACATCGGATGGAAGAGGACCTCC
CCAAATCGAGCGGGATGTGTTCGACTCGCGGGATGGATTTGGATCATCTT
ATCGCAACTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGATTCTCACCAATAAAACGCCCG
GCGCACCGAGCGTTCTGAACAATCAGATGAGTTCTGAGTCATTACTGATC
TATCACAGGAGTCAGCGAGCTCGATATCAATACGCCCCGCCCTGCACTCA
TCGCAGTACTGTTGTATTCATAGCATTCTGCCGAACATGAAGCATCCAAA
C
UFO04284.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10680-RB | 1272 | CG10680-RB | 92..848 | 5..761 | 3770 | 99.9 | Plus |
| CG10680-RA | 1026 | CG10680-RA | 55..811 | 5..761 | 3770 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19965062..19965278 | 545..761 | 1085 | 100 | Plus |
| 2L | 23513712 | 2L | 19964840..19965013 | 375..548 | 870 | 100 | Plus |
| 2L | 23513712 | 2L | 19964424..19964581 | 85..242 | 790 | 100 | Plus |
| 2L | 23513712 | 2L | 19964642..19964775 | 241..374 | 670 | 100 | Plus |
| 2L | 23513712 | 2L | 19964227..19964281 | 5..59 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:24:02 has no hits.
UFO04284.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:54:08 Download gff for
UFO04284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10680-RA | 51..821 | 1..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:02 Download gff for
UFO04284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10680-RA | 52..822 | 1..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:34 Download gff for
UFO04284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10680-RA | 52..822 | 1..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:34 Download gff for
UFO04284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19965063..19965289 | 546..771 | 98 | == | Plus |
| 2L | 19964224..19964281 | 1..59 | 94 | -> | Plus |
| 2L | 19964339..19964365 | 60..86 | 100 | -> | Plus |
| 2L | 19964426..19964581 | 87..242 | 100 | -> | Plus |
| 2L | 19964644..19964775 | 243..374 | 100 | -> | Plus |
| 2L | 19964840..19965010 | 375..545 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:02 Download gff for
UFO04284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19965063..19965289 | 546..771 | 98 | == | Plus |
| arm_2L | 19964224..19964281 | 1..59 | 94 | -> | Plus |
| arm_2L | 19964339..19964365 | 60..86 | 100 | -> | Plus |
| arm_2L | 19964426..19964581 | 87..242 | 100 | -> | Plus |
| arm_2L | 19964644..19964775 | 243..374 | 100 | -> | Plus |
| arm_2L | 19964840..19965010 | 375..545 | 100 | -> | Plus |
