UFO04287.5prime Sequence
1147 bp (1007 high quality bases) assembled on 2009-02-18
> UFO04287.5prime
CAGTCGACATGTCCGCTATTCTAAACCACGCAATTCGCCGCCAATTCGGC
GCTTCTGCCGCCCGGAATATGTCCGGCACCGCCGCCGTGGCCGGCGAGCA
CTCTGGTGGCTACAAGGTGTGGAAGCGCCTGTCCTTCTTCGTGGCCGTGC
CCGCCGTGGGACTGTGCATGCTGAACGCCTACCTGAAGCACCAGGAGGAG
CACGACAAGCCCCGCCAGGAGTTCGTCAAGTACGACTACCTGCGCCGCCG
CGAGAAGCGCTTCCCCTGGGGTGAGGGCCAGAAGAGCCTGTTCCACAACC
CCCACGTTAACGCCCTGCCCGACGGCTACGAGCACGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
AATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCC
ACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAA
AAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGT
AACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCG
TGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAACGT
GTAACAGGTGAACACTATCCCATATCACCAGCTCACGTCTTTCATTGCCA
TACGAAATTCGATGAGCATCATCAGGCGGGCAGATGTGAATAAGCCGATA
AAACTTGTGCTATTTTTTCTTTACGTCTTAAAAGGCGTATATCAGCTTGA
CGTTGTTAGTCTTGGACACTGACTGAATGTCTCAAGTTCTTTAACGA
UFO04287.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| levy-RB | 490 | CG17280-RB | 52..378 | 9..335 | 1635 | 100 | Plus |
| levy-RA | 593 | CG17280-RA | 52..378 | 9..335 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23548537..23548767 | 105..335 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 23548290..23548388 | 9..107 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:20 has no hits.
UFO04287.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:56 Download gff for
UFO04287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| levy-RA | 51..377 | 9..335 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:48 Download gff for
UFO04287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| levy-RA | 52..378 | 9..335 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:12 Download gff for
UFO04287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| levy-RA | 52..378 | 9..335 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:12 Download gff for
UFO04287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23548290..23548386 | 9..105 | 100 | -> | Plus |
| 2R | 23548538..23548767 | 106..335 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:48 Download gff for
UFO04287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19435813..19435909 | 9..105 | 100 | -> | Plus |
| arm_2R | 19436061..19436290 | 106..335 | 100 | == | Plus |
