UFO04288.5prime Sequence
880 bp (27 high quality bases) assembled on 2009-02-18
> UFO04288.5prime
CAATCCACATGGGGTTTCTAAGCCACACAGTTGTAAATCTTGTTGGTGAC
GCGAAATGCAAAAGAATGAATGAACTTATTGGTGAGGGCGCAAGCCTACT
TCCTAACTCCTTTGTCCATTACGAGCAACATACAAATAATATCCATGATA
ATTCGCACCTGCAGCTCAACCACCACTCGGGAAAACCGCTCTCCTGGGTT
CGGTTGCGGGATGAACATATCATTGCGGTGGATCACAAAAACTTTATCAA
CGATGCCCGGTTCGAATCGCTGCACCAGTCTACCACCTTGACGACACTTG
TATCCGGAGGGGCCCTGTCCACAACTGCGACACCCGTCTCTGCCCTGGGC
AACTCCTTCTCCCACGCTGTTCCTGGGGGTCAGGAGAGGGGCAACAGCAG
CAGCCTCAGCTGGACGCTGCAAATCAAGTATGTGAATCTGGAGGACGCCG
GCTGGTACAAGTGCCAGCTGGCAACGGAACCCAAAATGAGCGCCAAGGTG
CAGCTGTTTGTGATAACACCCCGAACCGAGCTAATCGACGATCGGGATCA
CTTTGTGAAGGCCGGCCCCAGGGTGGAGCTGCACTGCATCGAACATGGCA
CCCTGGAGGCCCCCAAGTATATCTTCTGGTACCGTGGCGACCAGCAAGTG
ACTGCCGAAAACGAGGGCAGCGGCGCCCACAGCGGATGGTACACGCCTAT
CGAGCGGAATATCTTCGGTAGCACCGAGCACTATCGGAACACGATTGGTT
CCCTGGACATTCCTCTGGTGCGCAAGATTCACTCCGGTACTACACGTGTG
AGCCAGAAACAGTGCGCCGCTTCTATGCAGTTGCACGTCTGAGCGGGAAT
ATTCTGCCTCGCATATAGTCGACTGCTGCT
UFO04288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr16-RC | 2810 | CG12591-RC | 1450..2174 | 163..880 | 2970 | 94.6 | Plus |
| dpr16-RB | 1968 | CG12591-RB | 608..1332 | 163..880 | 2970 | 94.6 | Plus |
| dpr17-RE | 2663 | CG31361-RE | 1647..1875 | 410..638 | 215 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5165924..5166431 | 9..516 | 2300 | 96.9 | Plus |
| 3R | 32079331 | 3R | 5166863..5167089 | 517..743 | 895 | 93 | Plus |
| 3R | 32079331 | 3R | 5167159..5167258 | 743..839 | 290 | 93 | Plus |
| 3R | 32079331 | 3R | 12110325..12110412 | 551..638 | 185 | 80.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:45 has no hits.
UFO04288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:55 Download gff for
UFO04288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr16-RA | 1541..2419 | 9..880 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:06 Download gff for
UFO04288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr16-RA | 1541..2419 | 9..880 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:23 Download gff for
UFO04288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr16-RB | 600..1332 | 155..880 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:23 Download gff for
UFO04288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5167160..5167265 | 744..845 | 92 | -> | Plus |
| 3R | 5165924..5166431 | 9..516 | 96 | -> | Plus |
| 3R | 5166863..5167089 | 517..743 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:06 Download gff for
UFO04288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 991646..992153 | 9..516 | 96 | -> | Plus |
| arm_3R | 992585..992811 | 517..743 | 92 | -> | Plus |
| arm_3R | 992882..992987 | 744..845 | 92 | -> | Plus |
