UFO04293.5prime Sequence
1124 bp (1032 high quality bases) assembled on 2009-02-18
> UFO04293.5prime
CAGTCGACATGTCTACCAATCAGCAGCAGCAGGCGAATCCTTCGGCGGCC
GTTGCCGCACCCGCCGCCTCCTCGGAATACCTGAAACGCACCTGCCTCAT
CTGCGGCTGCCACACCAACCAGACGATCAATATCTACGAGCCCCGCTCCG
GACCCAATATCGTTCAGCTAATCCAGGCGAAATTCAAGTTTCAGCCCCTG
AACGAGGACAAATTCCTCTGCTTTAGCTGCAACAACTGGCTGATCAACTG
GCACTCCCTGCAGGCGGTCAACAGCAATGAGGCCGAAAGCCAGAGCCAAA
GTCCCTCGCACATGGGCAACAGTGTGCTGCAGCAGGAAAGGACGAAGCTC
CGTCCGGTGGCGATGGTTCGACCCACGGTGCGAGTGCAGCCCCAATCGCA
GCCCCAACTGCAGCCCCAAGTTCCAATTAATCCCACACCCGCACCCATAG
TCTATTCGAAGCGAAGAGCCAGCAGACGCAGTGCCTCCGTCAGCCGGATG
AGCCGAGTGCTGCGCCAGTGTTGTGTGGAGAGTCTGCGGCGGAGTCCCAA
GAAGCGCAATCAGCAGTCGGTGTTCGTCTGTCTTAGGCCGCAGGGCCAGA
AGAGGAGCAATGCGATCTGCAAGGTGGAGTGTGTGGCGCCGCGCCGGAAA
CCAGTGGAGCGACTGGTTAAGGATGTGGCAGCTACAGCTACACCCACACC
AGTGCTCAATACACAATCCACGCCCACTTACCAAAGATTCCCGCAGCCCA
GTGTGGATGGCAAAGTAGTGGCCATGTTCCGTCGACTGGGAACCACACTC
AGTCGGGAAGAACCCGCCGCATATTCAGCAGAATCAAACCCCGCCTGCTC
GAAACTCCCGCAGATCATGAGTCCGCTCAAAGAGGCGCCGCGCTGGACGC
GGGACCTCGATGATGATGAGATACTGCTGGGATTCGATACCGCCATATCC
GAAGTCCTGCCACTGCCCGCTATCAGGTACCCACGAGAGACAAGAAACAG
CAGCCAAGAAATGAGCTGACTGGAGGAGGAGAAGACTGGATGCGACGACT
GAATGGGCAGGAGGCGACCCCTGACCGCAACCCCAACAGAAACAGCACAA
ATTCCACCAAGCTTAATTCCACCT
UFO04293.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phyl-RA | 1839 | CG10108-RA | 245..1279 | 9..1031 | 4870 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14427960..14428750 | 978..189 | 3890 | 99.7 | Minus |
| 2R | 25286936 | 2R | 14431908..14432093 | 194..9 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:12 has no hits.
UFO04293.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:54 Download gff for
UFO04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 239..1295 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:11 Download gff for
UFO04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 241..1297 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:19 Download gff for
UFO04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 241..1297 | 1..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:19 Download gff for
UFO04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14427960..14428744 | 195..978 | 99 | <- | Minus |
| 2R | 14431908..14432097 | 1..194 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:11 Download gff for
UFO04293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10315465..10316249 | 195..978 | 99 | <- | Minus |
| arm_2R | 10319413..10319602 | 1..194 | 97 | | Minus |
