UFO04295.5prime Sequence
577 bp (29 high quality bases) assembled on 2009-02-18
> UFO04295.5prime
CAATCCACATGGAGCCTTATGATGTCGTCGTCAACCGTCCCGTCGTCGTA
TATAACGGCTCCGGTGTGATCAAAACCGGCTTTGCTGGTGAGCACATTCC
ATTTTGCCGGTTTCCCAATTACGTTGGGCAGCCCAAGCTTGTCCTACTGA
TGGCTGGTGCGCTGGAGGGCGACATATTCGTTGGACCCAAGGCGGAGGAG
CACCGTGGCCTGCTTAGCATCCGGTACCCCATGGAGACGGCATTGTCACC
GACTGGAATGACATGGTTCGGATATGGAGCTACATTTACAGCAAAGAACA
TTTGGCCACCTTCCCTGATGATCATCCCGGGCTGCTGACCAAGGCCCCGC
TTAATCCACGCCGAAACCGCGAAAAGGCAGCCGAGTTCTTCTTTGAAGGC
GTCAATGCCCCTGCACTCTTTGTGTCCGTGCATGCGGTGCTCAATCTCTA
CGCCACCGGTCGTGTGACTGGCGTAGTGCTCCCTCCGGCGACGGTGTGAC
GCATGCGGTTCCTATCTACGAGGGATTCGCCATGCCTCACACTATTATGC
GCGTGGACATCACTGGGCGCGATGTGA
UFO04295.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arp1-RA | 1469 | CG6174-RA | 80..650 | 9..577 | 2280 | 93.5 | Plus |
| CG31347-RA | 865 | CG31347-RA | 728..776 | 57..9 | 185 | 91.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12692772..12692945 | 124..296 | 715 | 95.4 | Plus |
| 3R | 32079331 | 3R | 12693004..12693155 | 296..447 | 550 | 90.8 | Plus |
| 3R | 32079331 | 3R | 12693215..12693345 | 448..577 | 545 | 96.2 | Plus |
| 3R | 32079331 | 3R | 12692643..12692707 | 57..121 | 250 | 92.3 | Plus |
| 3R | 32079331 | 3R | 12691822..12691870 | 9..57 | 185 | 91.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:34 has no hits.
UFO04295.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:59 Download gff for
UFO04295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp87C-RA | 81..656 | 1..576 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:44 Download gff for
UFO04295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp1-RA | 74..649 | 1..576 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:31 Download gff for
UFO04295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arp1-RA | 74..649 | 1..576 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:31 Download gff for
UFO04295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12692643..12692707 | 57..121 | 92 | -> | Plus |
| 3R | 12692770..12692951 | 122..304 | 93 | -> | Plus |
| 3R | 12693013..12693155 | 305..447 | 91 | -> | Plus |
| 3R | 12693215..12693344 | 448..576 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:44 Download gff for
UFO04295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8518365..8518429 | 57..121 | 92 | -> | Plus |
| arm_3R | 8518492..8518673 | 122..304 | 93 | -> | Plus |
| arm_3R | 8518735..8518877 | 305..447 | 91 | -> | Plus |
| arm_3R | 8518937..8519066 | 448..576 | 96 | | Plus |
