UFO04296.5prime Sequence
1027 bp (948 high quality bases) assembled on 2009-02-18
> UFO04296.5prime
CAGTCGACATGCCTGCTCCGGTCGTCAAGAAGCCAGCAGCGAAAAAGCTG
CCCGCCGTGCCGGAATCGAAGCTGAAGTTCAGCAAGAAACAAATCTCCAA
GCGAGTCGCCGAGTCGAAACGTCGCCTGAAGAAGGCCGCCGTGATTGCCC
TGCGCAAGAAGGAGAACCTGGTCCGCGCCGAGAAGTACCAGAATGAGTAC
ATCAAGGCGGAACAGCGCGAGATCAAGCTGCGTCGCTTGGCCAAGAAGCG
CAACCAGTTCTACGTGCCCGCCGAGGCCAAATTGGCCTTTGTCGTCCGTA
TCCGCGGTATCAACAAGGTGGCTCCCAAGGTCCGCAAGGTTCTGCAGCTG
TTCCGTCTGAGGCAGATCAACAACGGTGTGTTCATCAAGCTGAACAAGGC
CACCATCAACATGCTGCGCATCGCCGAGCCCTACATCACCTGGGGCTATC
CCAATCTGAAGTCCGTGCGGGAGCTGATCTACAAGCGTGGATTCGTGAAG
CATAACCGCCAGCGCGTGCCCATCACCGATAACTTCGTGATCGAGCGGAA
GCTGCGTCAGGCGCACCAAATTCAGTGCGTCGAGGATCTTGTCCATGAGA
TCTTCACCGTGGGGCCCAACTTCAAGTACGCCTCCAACTTCCTGTGGCCC
TTCAAGCTAAACACCCCCACCGGCGGCTGGCGCAAGAAGGCCAACCATTA
TGTCAACGGTGGTGACTTCGGCAACCGCGAGGACCAGATCAACCGTCTGC
TGCGCAAGATGGTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATATCATAATCATAATCACAACTAG
CCTAGGAGATCTGGTCATGACTAGTGCTTGATCTCACATAAAAACGCCGC
GCACGAGCGTCTGACAATCAGATGAGTCTGAGTCATACTGAATCTATCAC
AGAGTCCAGCGAGCTCGATTTCATACGCCCGCCTGCCACTCATCGCAGTA
CTGTTGTATCATAGCATTCTGCGACAT
UFO04296.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL7-RB | 1167 | CG4897-RB | 146..901 | 9..764 | 3780 | 100 | Plus |
| RpL7-RA | 895 | CG4897-RA | 50..805 | 9..764 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10201598..10202055 | 307..764 | 2290 | 100 | Plus |
| 2L | 23513712 | 2L | 10201230..10201528 | 9..307 | 1495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:47 has no hits.
UFO04296.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:58 Download gff for
UFO04296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL7-RA | 41..808 | 2..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:12 Download gff for
UFO04296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL7-RA | 42..809 | 2..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:40 Download gff for
UFO04296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL7-RA | 42..809 | 2..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:40 Download gff for
UFO04296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10201599..10202059 | 308..769 | 99 | == | Plus |
| 2L | 10201225..10201528 | 1..307 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:12 Download gff for
UFO04296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10201225..10201528 | 1..307 | 98 | -> | Plus |
| arm_2L | 10201599..10202059 | 308..769 | 99 | == | Plus |
