UFO04301.5prime Sequence
1122 bp (1026 high quality bases) assembled on 2009-02-18
> UFO04301.5prime
CAGTCGACATGAGTAACGGCAGGCATTTGGCAAAAGGCTCACCCATGCCG
GATGTTCCCGAAGATGGTATCCTTCGCCTGTACTCGATGCGCTTCTGCCC
ATTTGCCCAACGGGTGCATCTGGTCCTGGACGCCAAGCAGATCCCGTATC
ACAGCATCTACATTAATCTCACAGACAAGCCGGAGTGGCTGCTGGAGAAG
AATCCACAGGGCAAGGTGCCGGCTCTAGAAATCGTGCGAGAACCTGGACC
ACCTGTGCTCACAGAGTCGCTACTGATTTGTGAATATCTGGACGAGCAGT
ATCCATTGCGACCACTCTATCCACGTGATCCGCTGAAGAAAGTGCAGGAC
AAGTTACTAATCGAGCGATTTAGAGCGGTGTTAGGTGCCTTCTTCAAGGC
ATCCGATGGCGGTGATCTGGAGCCCTTCTGGAGCGGCCTGGACATCTACG
AAAGGGAGCTGGCTCGACGTGGTACGGAATTCTTTGGTGGCGAGCAGACG
GGCATTCTGGACTATATGATTTGGCCCTGGTGTGAGCGCCTCGAGCTCCT
TAAGTTGCAGCGTGGAGAGGATTATAACTACGATCAGAGTCGCTTCCCCC
AGCTGACCCTTTGGCTGGAACGCATGAAACGAGATCCGGCTGTGATGGCC
TTCTACATGGAGGCCGAGGTTCAGGCGGAGTTCCTGCGTACACGGAGCCT
GGGTCGACCCAATTACAATCTGCTGGTCAAGGATGCCGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCAACAGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCGACATGAGCATCACAACGGCATGAAT
GAACTGATCGCAGCGGCCTCAGCCACCCTTGTCGCCTTGGCGATTATTTT
TGCCAACTTAACCGGGCTAGAA
UFO04301.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| se-RA | 825 | CG6781-RA | 38..767 | 8..737 | 3650 | 100 | Plus |
| GstO3-RA | 881 | CG6776-RA | 85..257 | 24..196 | 280 | 78.2 | Plus |
| GstO1-RA | 954 | CG6662-RA | 134..244 | 78..188 | 195 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8520672..8521242 | 35..605 | 2855 | 100 | Plus |
| 3L | 28110227 | 3L | 8521299..8521431 | 605..737 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 8519538..8519671 | 63..196 | 250 | 79.1 | Plus |
| 3L | 28110227 | 3L | 8524566..8524676 | 188..78 | 195 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:55 has no hits.
UFO04301.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:51 Download gff for
UFO04301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| se-RA | 33..773 | 1..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:59 Download gff for
UFO04301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| se-RA | 33..773 | 1..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:31 Download gff for
UFO04301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| se-RA | 33..773 | 1..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:31 Download gff for
UFO04301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8521300..8521437 | 606..743 | 97 | == | Plus |
| 3L | 8520674..8521242 | 37..605 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:59 Download gff for
UFO04301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8514400..8514537 | 606..743 | 97 | == | Plus |
| arm_3L | 8513774..8514342 | 37..605 | 100 | -> | Plus |
