UFO04302.5prime Sequence
1125 bp (1035 high quality bases) assembled on 2009-02-18
> UFO04302.5prime
CAGTCGACATGACAACCTCCGCTGACAGTGTGTTCGTTGCCCGATCCGAT
GGCATCTCCGCCGAAGGAGTCCGGGATCAGTACGCCGATGGCAAGGCCGC
CAAGGTGTGGGAAATCTTCATCGGTGACAAAAACTCGCGTACGGACAACT
ACAAGAACTTCCTGATCGATATGCTGCGCAATAAGGGATGCAAGCGTGTC
CTAGACGTGGCCTGTGGAACGGGTGTGGACTCCCTGATGCTTGTGGAGGA
GGGCTTCGAAGTTGTGTCCGTAGATGCCTCTGATAAGATGTTGAAGTACG
CCCTCAAGGAGCGCTGGGCCCGGCGAAATGAAGCTGCCTTCGATAAGTGG
GTCATTGAGGAAGCCAACTGGTTGACACTGTACGACGACATTCAGGAGCA
CATTCAGGATGGTTTCGATGCCGTCATTTGCTTGGGCAACTCCTTTGCCC
ACTTGATGGACGGGTTCGGGGATCAGCGGGAGCACAAGCAGGCTATTGGC
AACTTCGAAAAGTGCCTCAAGCCTGGAGGCGTCCTGCTTATCGATCATCG
CAACTACGACAATATCCTGGAAACGGGAGCTACGCCTGCCAAGAGCATCT
ACTATAATACGAGTCACACGGCGGACATCAAGACATCCGTGCTCTTCTAC
TGCGGTAAGCCCGCCCTGGTGTCGATGGACTACCTGATCGCTGGCAACAA
GTTGACCAGTGAGTTCCGTCTGTCCTACTATCCCCACGGGCTGAAACGAT
TCCAGGAGATTCTAGCCGAGATCTTCTCCGCCAAAGCCAAGCACCAGTTG
TATGGTGACTTCAAGGAGATGAGCCAGGTGAAGAACCCCGCCTTCTACAT
TCACCTGATCGAAAAGCCACAGGTTGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAGTGGTCATATCATAATCATAATCATATCATAAT
CACAACTAGCCTAGAGATCTGTCATGCTAGTGCTTGATTCTCACCATAAA
AACGCCGGCGCAACGAGCGTTCTGAACAATCAGATGAGTTCTGAGTCATA
CTGGATCTTATCAAAGGAGTCAGCACCGAATCAGTACGCCGGCCTGCACT
CATCGCAGTACTGTTGTAATCATTA
UFO04302.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gnmt-RA | 990 | CG6188-RA | 42..908 | 9..875 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12675736..12676002 | 609..875 | 1335 | 100 | Plus |
| 3R | 32079331 | 3R | 12675186..12675443 | 351..608 | 1290 | 100 | Plus |
| 3R | 32079331 | 3R | 12674649..12674863 | 9..223 | 1075 | 100 | Plus |
| 3R | 32079331 | 3R | 12674998..12675126 | 223..351 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:12:46 has no hits.
UFO04302.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:50 Download gff for
UFO04302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6188-RA | 33..914 | 1..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:28 Download gff for
UFO04302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6188-RA | 34..915 | 1..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:36 Download gff for
UFO04302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gnmt-RA | 34..915 | 1..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:36 Download gff for
UFO04302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12674641..12674863 | 1..223 | 98 | -> | Plus |
| 3R | 12674999..12675126 | 224..351 | 100 | -> | Plus |
| 3R | 12675187..12675443 | 352..608 | 100 | -> | Plus |
| 3R | 12675736..12676009 | 609..884 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:28 Download gff for
UFO04302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8500721..8500848 | 224..351 | 100 | -> | Plus |
| arm_3R | 8500363..8500585 | 1..223 | 98 | -> | Plus |
| arm_3R | 8500909..8501165 | 352..608 | 100 | -> | Plus |
| arm_3R | 8501458..8501731 | 609..884 | 98 | == | Plus |
