UFO04305.5prime Sequence
1095 bp (975 high quality bases) assembled on 2009-02-18
> UFO04305.5prime
CAGTCGACATGCAGCAGAAGCGCAGAGAACCCGTGCAGGCTGTCCAGGTC
TTCGGACGCAAGAAAACCGCCACCGCCGTCGCTTACTGCAAGCGTGGCAA
CGGCCTCCTGAAGGTGAACGGTCGTCCTCTGGAGCAGATTGAACCCAAGG
TCCTGCAATACAAACTGCAGGAGCCCCTTCTGTTGCTCGGCAAGGAGAAA
TTCGCCGGCGTCGACATCCGCGTGCGCGTTAGCGGTGGTGGTCATGTAGC
CCAGATCTACGCCATCCGCCAGGCCATTTCCAAGGCTCTCGTTGCCTTCT
ACCAGAAATACGTCGATGAGGCCTCCAAGAAGGAGATCAAGGACATTCTG
GTGCAGTACGACAGAACCCTGCTGGTCGGCGATCCGCGTCGCTGCGAGCC
CAAGAAGTTCGGCGGTCCAGGTGCCCGTGCTCGCTACCAGAAGTCGTACC
GTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGA
TCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCT
GCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGG
AAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCAC
CTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAACGGGGGCGAAGAG
TTGTCCATATTGGCACGTTTAATCAAACTGGTGAACTCACCCAGGATTGG
CTGAAACGAAAACTATTCTCATAACCCTTAGGGAAATAGCCAGGTTTCAC
CCGTAACCCCCACACCTGCGATAATTGTGAGAAACTGCCGAATCGTCGTG
TGTCCTTCAAAGGGATGAAACGGTCGATTGCTACATGAAACGGTGAAACA
GGTGAGACCAATCAATAACAGCACGCTCTCTCATGCTAACAATCG
UFO04305.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS16-RB | 754 | CG4046-RB | 213..656 | 9..452 | 2220 | 100 | Plus |
| RpS16-RA | 573 | CG4046-RA | 32..475 | 9..452 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22607755..22607897 | 310..452 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 22606507..22606641 | 61..195 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 22606932..22607048 | 193..309 | 585 | 100 | Plus |
| 2R | 25286936 | 2R | 22606245..22606288 | 19..62 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:23:47 has no hits.
UFO04305.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:49 Download gff for
UFO04305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS16-RA | 31..490 | 1..463 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:54 Download gff for
UFO04305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS16-RA | 25..484 | 1..463 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:28 Download gff for
UFO04305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS16-RA | 25..484 | 1..463 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:28 Download gff for
UFO04305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22606245..22606288 | 19..62 | 100 | -> | Plus |
| 2R | 22606509..22606640 | 63..194 | 100 | -> | Plus |
| 2R | 22606934..22607048 | 195..309 | 100 | -> | Plus |
| 2R | 22607755..22607897 | 310..452 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:54 Download gff for
UFO04305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18493750..18493793 | 19..62 | 100 | -> | Plus |
| arm_2R | 18494014..18494145 | 63..194 | 100 | -> | Plus |
| arm_2R | 18494439..18494553 | 195..309 | 100 | -> | Plus |
| arm_2R | 18495260..18495402 | 310..452 | 100 | == | Plus |
