UFO04306.5prime Sequence
1124 bp (1004 high quality bases) assembled on 2009-02-18
> UFO04306.5prime
CAGTCGACATGCCCGAATATGTGCCGGCACGGGGCTTCAAGGAGATGGAA
AATCTGATCAAGCTGTACGAGAACCAGCGCAGCCCCATCTACATCTACTT
CTACGGCGAGAAAGACAAGGACGGACGCAGCTGGTGTCCGGACTGCGTGG
CGGCCGAGGAAACTATCATGAGTGCCTTTCGCAACCACGCGCCGGCGGAT
TGCATGATCCTGGTGGTGGACGTGGGTAGCCGGGAATCCTGGATAGGCAA
GGACAACATGTTCCGAAAGCCGCCATACTCGGTGGAAGGCATACCGACCC
TTATACGCTGGAAGGGCGTGGAGCGCCTGGATGGGGATCAGCTGCTCAAG
TCGAGTCTTCTGGAGCTCTTTTTCGAGGAGACCGATCCGAAGAAGTCCAA
TTTTGTCGCCCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGA
AACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAATAAACCCTT
TAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCCGAATA
TATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAAGCGAT
GAAAACGTTTCAGTTGCTCATGGAAACCGGTGTTAACAAGGGGAACACTA
TCCCATATCACCAGCTTCACGGTTTTTCATTGGCATACGAATTCCGGATG
AGCAATCCTAAGCGGGCCGATGTG
UFO04306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3939-RB | 747 | CG3939-RB | 313..717 | 9..413 | 2025 | 100 | Plus |
| CG3939-RA | 931 | CG3939-RA | 497..901 | 9..413 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3175933..3176193 | 153..413 | 1305 | 100 | Plus |
| X | 23542271 | X | 3175514..3175658 | 9..153 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:04:07 has no hits.
UFO04306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:47 Download gff for
UFO04306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3939-RA | 388..803 | 1..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:02 Download gff for
UFO04306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3939-RA | 489..904 | 1..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:26 Download gff for
UFO04306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3939-RA | 489..904 | 1..417 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:26 Download gff for
UFO04306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3175934..3176193 | 154..413 | 100 | == | Plus |
| X | 3175506..3175658 | 1..153 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:02 Download gff for
UFO04306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3069539..3069691 | 1..153 | 97 | -> | Plus |
| arm_X | 3069967..3070226 | 154..413 | 100 | == | Plus |
