UFO04307.5prime Sequence
1106 bp (1007 high quality bases) assembled on 2009-02-18
> UFO04307.5prime
CAGTCGACATGAGCGATGAATTGACTAAGGAGCAAACTGCATTACTACGT
AATGCATTTAATGCTTTTGACCCTGAAAAAAATGGATATATCAACACAGC
TATGGTGGGTACGATACTTAGCATGTTGGGTCATCAACTTGATGATGCAA
CTCTTGCTGACATTATCGCTGAAGTCGATGAGGATGGTTCGGGCCAAATC
GAATTTGAAGAATTTACCACCCTGGCAGCCCGCTTCCTTGTGGAAGAGGA
CGCTGAAGCTATGATGGCTGAATTGAAGGAAGCTTTCCGCCTTTACGACA
AAGAAGGAAATGGATATATAACTACTGGTGTTCTTCGTGAAATCCTGCGC
GAACTAGACGATAAATTGACAAATGACGACCTGGACATGATGATTGAGGA
AATTGATTCCGATGGATCGGGTACTGTTGATTTTGATGAATTTATGGAAG
TAATGACCGGTGGCGACGACGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAACTG
GTGAACTCACCCAGGATTGCTGAGACGAAAAACATATTCTCATAACCCTT
TAGGAATAGGCCAGTTTCACCGTAACACGCCACATCTGCGAATATTTGTG
TAGAACTGCGAAATCGTCTTGTATCATCAGACGATGAAACGTTCAGTTGC
TCATGAACGGGTACAGTAACTATTCCCAATACCAGCTACCGGCTCTATGC
ATCGAA
UFO04307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC41C-RB | 1880 | CG2981-RB | 224..685 | 9..470 | 2310 | 100 | Plus |
| TpnC41C-RA | 821 | CG2981-RA | 224..685 | 9..470 | 2310 | 100 | Plus |
| TpnC47D-RB | 791 | CG9073-RB | 439..503 | 384..448 | 205 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5066528..5066923 | 438..43 | 1980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:06 has no hits.
UFO04307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:47 Download gff for
UFO04307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC41C-RA | 224..688 | 9..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:07 Download gff for
UFO04307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC41C-RA | 224..688 | 9..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:16 Download gff for
UFO04307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC41C-RA | 224..688 | 9..474 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:16 Download gff for
UFO04307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5066528..5066923 | 43..438 | 100 | <- | Minus |
| 2R | 5066977..5067006 | 12..42 | 96 | | Minus |
| 2R | 5066432..5066463 | 439..470 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:07 Download gff for
UFO04307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 953937..953968 | 439..470 | 100 | <- | Minus |
| arm_2R | 954033..954428 | 43..438 | 100 | <- | Minus |
| arm_2R | 954482..954511 | 12..42 | 96 | | Minus |
