UFO04309.5prime Sequence
1128 bp (1025 high quality bases) assembled on 2009-02-18
> UFO04309.5prime
CAGTCGACATGCAGCTGTTCGTCCGTGGACTAGAGACCATCGAGGCCCTG
GAGGTTTCCCAGGATGCCACCATTGCCGGAGTCAAGAACCAACTGGCCCA
GATCCATGGATTCAACGCCGAGGAATTCAGCCTCGATTGCGAGGGCATCA
CTCTGGCCAACGAGACTCCCGTGACCGCCCTGAGCTCCTTTGAGCTGGAC
CTCAACATTCCCATGCTGGGAGGTAAGGTGCACGGTTCTCTGGCCCGTGC
CGGCAAGGTCAAGGGACAGACGCCCAAGGTGGAGAAGCAGGAGAAGAAGA
AGAAGAAGACCGGACGCGCCAAGCGCAGGATCCAGTACAACCGCCGGTTC
GTCAACTTTGTGCAGGGCTTCGGCCGTCGTCGCGGCCCCAACGCCAACTC
CACAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGC
ACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAA
GAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCC
AGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAA
TAGCCAGGTTTTCACCGTACACGCCACATCTTGCGATATATGTGTAGAAC
TGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAACGTTCAGTTTGC
TCATGGAAACGTGTTAACAGGGTGAACACTATTCCATATCACAGCTCACG
TCTTTCATGCCATACGAATTCGATGACATCATCAGGCGGCAGAATGTAAT
AAGCCGGAATTAAACTTGGGGCCTAATT
UFO04309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS30-RC | 598 | CG15697-RC | 123..519 | 8..404 | 1985 | 100 | Plus |
| RpS30-RB | 507 | CG15697-RB | 32..428 | 8..404 | 1985 | 100 | Plus |
| RpS30-RA | 517 | CG15697-RA | 42..438 | 8..404 | 1985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20851029..20851348 | 85..404 | 1600 | 100 | Plus |
| 3R | 32079331 | 3R | 20850865..20850943 | 8..86 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:07:28 has no hits.
UFO04309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:46 Download gff for
UFO04309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS30-RB | 10..414 | 1..404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:38 Download gff for
UFO04309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS30-RA | 40..444 | 1..404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:35 Download gff for
UFO04309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS30-RA | 34..438 | 1..404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:35 Download gff for
UFO04309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20850857..20850943 | 1..86 | 95 | -> | Plus |
| 3R | 20851031..20851348 | 87..404 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:38 Download gff for
UFO04309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16676579..16676665 | 1..86 | 95 | -> | Plus |
| arm_3R | 16676753..16677070 | 87..404 | 100 | == | Plus |
