UFO04311.5prime Sequence
1063 bp (1028 high quality bases) assembled on 2009-02-18
> UFO04311.5prime
CAGTCGACATGGGATGGGACTGGGCGGTCGGAGGTATATCCGATGAGATT
CCGAGGACAACGGGACCAGAATGCATCAACTACATGACAGATCGACGTCG
CTGGTTGGAGACGATACTACTGTCCGCCCTCTTCATCTTTATAATGCACC
GCTCCTGGCAACGCCTAGCGCCGATTAAACTTCCGCCGCCGCACGAGATA
CAGAAGCCACACAGTCCTACAAGACTGTTTCTGCTAATAGCCTTGTCAAT
GATTTTTGGCATTGAGATGGGCTTCAAACTCTCCGGACAGTCAATGATTT
TCGCCTTGAATCCATGTCATGTCCAGTCATGCCTGCAGATTTATCTTTTG
GCCGCCAAGCCGACGAAGACGACAACAGCGCTCTTTCGTATACAGATGAG
CAATCTCAACGGCCCATTTCTGGCGTTTCTTTTCCCCGAGGTGGAGGGCC
GCACATATCCCTTCGAGCAGGCCACCTATTGGATCCAGCATGCACTGCTC
TATATAATACCGATTTACATTATCCGAAGCGGAGCGTACACTGTCGAGGA
CCTCAGCGAGTTCCACTGGTCACATATAGGTACCGCCTTCATGCTGTTTT
ATCACTTCATCCTTCTCTCTCCGCTCTCAATTTTTACTGGTATCAATCTG
GACCACATGCTCTGTGCGGCTATGTCAGATCCGTTCCAGGGCTCGAATTA
CCGGATATTTGCGTGCTGCCACCAAGCACTGCTCTGTCCGCTGCTGAGTA
AGGGCACAGTGGTGCTGTTCGGACGCCGGAATCGGAGCAGCAGCGGCCTG
ACCGGATCGGGAAGTATGCCGGAGCCGAGGGGCGAGGCTGCCCAGTATCA
CCAATTAACCCAAGGTGACTATGCCATGCAGGAGGAGGCGATATTGCGAC
ACCGATTTAGCAACCAGGAAGCGGTGGACGATGGACATCCGCATGACGCA
GGGAAATGGCGTCCCTTACAGCAGAGTACACCATGCAACACCAAGATCGA
CGCCAAGCTTTCTAGACCATCGTTTGGCGCCGCGGGCCCCAGGTAGGTTG
TCCATAATCATAA
UFO04311.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14591-RD | 1640 | CG14591-RD | 169..1164 | 9..1001 | 4905 | 99.7 | Plus |
| CG14591-RC | 1627 | CG14591-RC | 156..1151 | 9..1001 | 4905 | 99.7 | Plus |
| CG14591-RB | 1771 | CG14591-RB | 300..1295 | 9..1001 | 4905 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6037050..6037404 | 986..633 | 1725 | 99.7 | Minus |
| 2R | 25286936 | 2R | 6038071..6038400 | 338..9 | 1650 | 100 | Minus |
| 2R | 25286936 | 2R | 6037817..6038013 | 532..336 | 985 | 100 | Minus |
| 2R | 25286936 | 2R | 6037661..6037762 | 632..531 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:09 has no hits.
UFO04311.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:53 Download gff for
UFO04311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14591-RB | 301..1296 | 9..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:09 Download gff for
UFO04311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14591-RB | 300..1295 | 9..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:18 Download gff for
UFO04311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14591-RB | 300..1295 | 9..1001 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:18 Download gff for
UFO04311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6037033..6037404 | 633..1001 | 99 | <- | Minus |
| 2R | 6037661..6037761 | 532..632 | 100 | <- | Minus |
| 2R | 6037818..6038010 | 339..531 | 100 | <- | Minus |
| 2R | 6038071..6038400 | 9..338 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:09 Download gff for
UFO04311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1924538..1924909 | 633..1001 | 99 | <- | Minus |
| arm_2R | 1925166..1925266 | 532..632 | 100 | <- | Minus |
| arm_2R | 1925323..1925515 | 339..531 | 100 | <- | Minus |
| arm_2R | 1925576..1925905 | 9..338 | 100 | | Minus |
