UFO04314.5prime Sequence
1113 bp (934 high quality bases) assembled on 2009-02-18
> UFO04314.5prime
CAGTCGACATGAGAAATAATTGCAACGCGCTTTTCCTGGCATCGCTAGTG
ACTTGGTCGGGGGTGATGTGCAGCACGGTACTGGGCACCACAGAAGGCCA
GGAAACACCTTTGGCCCTTCCTGTGGCGGAGCAGACGCAGCCCACTACAG
CCATACAAGGAGAAGTATGGGAGGAGGACGATCACGAAGTGCTTATAAGA
AATGAACGTGGCACCAAGAGCGACGGTCTGTCTTGTCGATATGGCAAAAA
TCCGTGGACTGAGTGTGACACCAAAACCAATACGCGTTCAAGAACATTGA
CATTAAAGAAGGGCGACCCGGCATGCGACCAAACGCGAACCATTCAGAAG
AAATGTAAAAAAGCCTGTCGATATGAAAAGGGATCTTGGTCGGAATGTGC
AACCGGACAAATGACTAGAGCTGATAAGTTGAAAGCGAGCAGTGATCCGT
CCTGCGAAGCCACGCGGGTCATCAAGAAGAACTGCAAGCCCGGAAAGTCC
AAGGACAAAAGTGCCAAGGAGCAGCGGAAGAACAAAGATAAAGCTGCTCG
CAAAGGACGCGTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGGAAAGCCATCACAAACTGCATGATGAACCTGAATCGCAGCG
GCATCAGCACCTTGTCGCCTTGCTATAAATATTTGCTCATTGGTGAAACT
GGGGGCCGAAGAGTTGTCCATTATTGCCACGTTTAATCAAACTGGTGAAC
TCACCAGGATGGCTGAAACGAAAACTATCTCAAATAACCCTTAGGAATTG
GCAAGTTCACCGTACCGCCAATCTGCAATATTTGGTTAAACTGCGAAATC
GTCTGGTATCAAC
UFO04314.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| miple-RC | 1891 | CG1221-RC | 116..671 | 8..563 | 2765 | 99.8 | Plus |
| miple-RB | 1888 | CG1221-RB | 113..668 | 8..563 | 2765 | 99.8 | Plus |
| miple-RA | 1904 | CG1221-RA | 129..684 | 8..563 | 2765 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 268242..268461 | 8..227 | 1085 | 99.5 | Plus |
| 3L | 28110227 | 3L | 268779..268960 | 362..543 | 910 | 100 | Plus |
| 3L | 28110227 | 3L | 268562..268700 | 225..363 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:16:48 has no hits.
UFO04314.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:43 Download gff for
UFO04314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| miple-RA | 120..688 | 1..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:25 Download gff for
UFO04314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| miple-RA | 120..688 | 1..568 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:50 Download gff for
UFO04314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| miple-RA | 120..688 | 1..568 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:50 Download gff for
UFO04314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 268233..268459 | 1..225 | 98 | -> | Plus |
| 3L | 268563..268700 | 226..363 | 100 | -> | Plus |
| 3L | 268781..268960 | 364..543 | 100 | -> | Plus |
| 3L | 269097..269119 | 544..567 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:25 Download gff for
UFO04314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 268233..268459 | 1..225 | 98 | -> | Plus |
| arm_3L | 268563..268700 | 226..363 | 100 | -> | Plus |
| arm_3L | 268781..268960 | 364..543 | 100 | -> | Plus |
| arm_3L | 269097..269119 | 544..567 | 91 | -> | Plus |
