UFO04315.5prime Sequence
1108 bp (1013 high quality bases) assembled on 2009-02-18
> UFO04315.5prime
CAGTCGACATGCCTTCTTACGAACTAGCACTGGTGCTCCGCCAATTGCCT
CGCCCCGAACTGATTTCCGTGATTAGGCGAACGGCCGAGTCCATCCTGGA
CAAGGGCGGCATTATCCGGAAGCTGGAGAACCTGGGATCCCGCGCCCTGC
CCCACAAAGTCAGCGAACACGGGGTGGTTCACCGGGAAGGCACCCACTTC
ACCATCGCCTTTGATACGGCGCCCACTAAGATCGCAGACTTGAAGGAGGA
GTTTGGCCGCGACATCGACATCATACGGCGCTACATCTTCAAGGTGGAGG
AGCCCGAGCAGAAGCCCTGCACGCTGCACGAGGAGATGCTGCCACCCGCG
TATCGCAAGGATGTGCAGGAGATCATTGCGGCCGCCCAGAAGAAGCAAAA
GAAGAAGTTCAACTACAACTCCGGCCTGGACTACTATCCCTTCCAAAAAG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCT
ATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAG
CCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTT
GTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTT
GTCCATATTGGCCACGTTTAAATCAAACTGGTGAACTCACCCAGGGATTG
GCTGAGACGAAAAACATATTCTCAATAACCCTTTAGGGAAATAGGCCAGG
TTTCACCGTAACACGCCACATCTGCGAATATATGTGTAAAACTGCGAAAT
CGTCGTGGTATTCACTCCAGAGGATGAAAGTTCGTTGCTCAAGAAAACGG
GGTAACAGGGGGACCTATCCATATCACACCCTACGTCCTTTCTTGACCTA
CGAATTCG
UFO04315.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS6-RB | 628 | CG15016-RB | 152..592 | 9..449 | 2205 | 100 | Plus |
| mRpS6-RA | 535 | CG15016-RA | 59..499 | 9..449 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4364812..4365207 | 54..449 | 1980 | 100 | Plus |
| 3L | 28110227 | 3L | 4364701..4364745 | 9..53 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:07:25 has no hits.
UFO04315.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:42 Download gff for
UFO04315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS6-RA | 139..590 | 1..453 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:36 Download gff for
UFO04315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS6-RA | 51..502 | 1..453 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:34 Download gff for
UFO04315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS6-RA | 51..502 | 1..453 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:34 Download gff for
UFO04315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4364693..4364745 | 1..53 | 94 | -> | Plus |
| 3L | 4364812..4365207 | 54..449 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:36 Download gff for
UFO04315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4364693..4364745 | 1..53 | 94 | -> | Plus |
| arm_3L | 4364812..4365207 | 54..449 | 100 | == | Plus |
