UFO04316.5prime Sequence
1131 bp (1031 high quality bases) assembled on 2009-02-18
> UFO04316.5prime
CAGTCGACATGGCCAAGATCATTAAGGCGTCCACAGGTTTGACTGGACTC
GCCGTGTCCACCAATCCACACCACACGCTGAGTGCTCTGTATGGCAAGAT
TCTGCGGGCGGTGTCCAAGATGCCACAGGACGCCAGCTACCGCAAGTACA
CGGAGCAACTGGTCAAGCAGCGCGCCGATTCTGTGGCCCAACACAAGGAC
ATCACTGCCCTGGAAAAGGCCGTCGGTTGCGGTCAAGTGGAGGAGCTAAT
TGTCCAGGCCGAGAACGAGCTGATCCTTGCGCGCAAAATGCTCGGCTGGA
AGCCCTGGGAGAAGTTGGTCCAAGCCGCGCCTGCCAAGCAGTGGGACTGG
CCACCAGCCCAGATCATGGAGCCCAAGGTTGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT
TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTT
TAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACA
TATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACAC
GCCACATCTTGCGAATATATGTGTAGAACTGCCGGAAATCGTCGTGTATT
CACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGTGTAAC
AGGGTGAACCACTATCCCATTATCACCAGCTCACGTCTTTCATGCATACG
AATCGGAGTGAACACTCATCAGGCGGCAGATGTGATAAAGGCGGATAACT
GTGCTTATTTTTCTTTACGTCTTAAAGCGTA
UFO04316.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6463-RA | 597 | CG6463-RA | 90..463 | 7..380 | 1870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10693318..10693506 | 380..192 | 945 | 100 | Minus |
| 3L | 28110227 | 3L | 10693706..10693868 | 191..29 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:34 has no hits.
UFO04316.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:41 Download gff for
UFO04316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6463-RA | 85..467 | 1..388 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:38 Download gff for
UFO04316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6463-RA | 87..469 | 1..388 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:53 Download gff for
UFO04316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6463-RA | 87..469 | 1..388 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:53 Download gff for
UFO04316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10693318..10693506 | 192..380 | 100 | <- | Minus |
| 3L | 10693706..10693867 | 30..191 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:38 Download gff for
UFO04316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10686418..10686606 | 192..380 | 100 | <- | Minus |
| arm_3L | 10686806..10686967 | 30..191 | 100 | <- | Minus |
