UFO04319.5prime Sequence
1148 bp (1029 high quality bases) assembled on 2009-02-18
> UFO04319.5prime
CAGTCGACATGAGGCATCTCTGGCTGCTCCTTCTTATCGCCTGTGGATCT
GTCCAGTTCCCAGGTGTGCTGACCTTGCCGGAGGCACTCCCAGCCAAATC
TTCATCGGCCGCTGGAGGCGGAAACGGAGGTGGAGCCGGGGGAGCCGTCA
CTGCCCCGTCAGCAGGAGACACCAGCAAGGACTACGACTACGAGGAGGAC
CAGCAGCGGGCTCCGGGAAACCTGGCCAAGTCGACCGCTGATCCCAAAGT
TCCAGAGCCATACTTCGAGCACAGCGATGTGGATATCTATGTGCCGCAGA
ACGCGACCAGCGCCAAGTTGGAGTGCCCAGTTAAAAATTATAATGCTGCA
CACCACGTCGTTCTCTGGTACAAGGAGAAGGTACAGGTATCCAGCGGAAT
GAATATATTCAACCACATCTATGCCCTGGACGAGCAGTTCTCCCTGACCG
TTCCCCTGGCATCCAATGCCACCGAGGAGCGCTACGAGTGCGAGGTACTG
CCGAACAAAGTGCGACACACGGCTACCATTCGCTTTGGCCCGGAGCCAAG
CACCCCGGCTCCATCTCTGCTTCCGGCACCGGCGGGCACATCTGCTTCCT
CCGTCAACGATTCGGCGGCTCACGGACGGGACATTAGCCTCTGGCTGCTG
GGCCTCTTTCTGGCCCCGCTCCAGTTGGCAGTGACCTTTCGGTTCGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAGCGAGCTCGATATCAAATTACGCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAGCATCACA
AACGCATGATGACCTGAATCGCAGCGCATCAGCACTTGTCGCTGGCGTTT
AATATTTGCCCATGTAACGGGGGCGAGAAAGTTGTCGATTGCACGTATTC
AACTGGTGATTCCAGATGGCTGAACGAAACATTTCATAACTTTAGGAA
UFO04319.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6044-RG | 1652 | CG6044-RG | 230..916 | 9..695 | 3435 | 100 | Plus |
| CG6044-RA | 1484 | CG6044-RA | 230..916 | 9..695 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22407454..22407804 | 345..695 | 1755 | 100 | Plus |
| 2R | 25286936 | 2R | 22407040..22407325 | 60..345 | 1430 | 100 | Plus |
| 2R | 25286936 | 2R | 22404406..22404462 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:28 has no hits.
UFO04319.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:40 Download gff for
UFO04319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6044-RA | 226..926 | 1..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:33 Download gff for
UFO04319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6044-RA | 222..922 | 1..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:50 Download gff for
UFO04319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6044-RA | 222..922 | 1..701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:50 Download gff for
UFO04319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22404398..22404460 | 1..63 | 93 | -> | Plus |
| 2R | 22407044..22407325 | 64..345 | 100 | -> | Plus |
| 2R | 22407455..22407810 | 346..701 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:33 Download gff for
UFO04319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18291903..18291965 | 1..63 | 93 | -> | Plus |
| arm_2R | 18294549..18294830 | 64..345 | 100 | -> | Plus |
| arm_2R | 18294960..18295315 | 346..701 | 99 | == | Plus |
